Gene : Cagra.4396s0026 C. grandiflora v1.1

Defline:  (1 of 1) PTHR11254:SF281 - E3 UBIQUITIN-PROTEIN LIGASE UPL6 Genomic Order:  26
Name:  ? Cagra.4396s0026 Secondary Identifier:  ? PAC:28918083

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4396s0026 0.5kb upstream 0.5kb upstream 8747 true Scaffold4396: 88595-97341 Capsella grandiflora
Cagra.4396s0026 0.5kb upstream 0.5kb upstream 500 false Scaffold4396: 88595-89094 Capsella grandiflora
Cagra.4396s0026 0.5kb downstream 0.5kb downstream 8747 true Scaffold4396: 89095-97841 Capsella grandiflora
Cagra.4396s0026 0.5kb downstream 0.5kb downstream 500 false Scaffold4396: 97342-97841 Capsella grandiflora
Cagra.4396s0026 1.0kb upstream 1.0kb upstream 9247 true Scaffold4396: 88095-97341 Capsella grandiflora
Cagra.4396s0026 1.0kb upstream 1.0kb upstream 1000 false Scaffold4396: 88095-89094 Capsella grandiflora
Cagra.4396s0026 1.0kb downstream 1.0kb downstream 9247 true Scaffold4396: 89095-98341 Capsella grandiflora
Cagra.4396s0026 1.0kb downstream 1.0kb downstream 1000 false Scaffold4396: 97342-98341 Capsella grandiflora
Cagra.4396s0026 2.0kb upstream 2.0kb upstream 10247 true Scaffold4396: 87095-97341 Capsella grandiflora
Cagra.4396s0026 2.0kb upstream 2.0kb upstream 2000 false Scaffold4396: 87095-89094 Capsella grandiflora
Cagra.4396s0026 2.0kb downstream 2.0kb downstream 10247 true Scaffold4396: 89095-99341 Capsella grandiflora
Cagra.4396s0026 2.0kb downstream 2.0kb downstream 2000 false Scaffold4396: 97342-99341 Capsella grandiflora
Cagra.4396s0026 5.0kb upstream 5.0kb upstream 13247 true Scaffold4396: 84095-97341 Capsella grandiflora
Cagra.4396s0026 5.0kb upstream 5.0kb upstream 5000 false Scaffold4396: 84095-89094 Capsella grandiflora
Cagra.4396s0026 5.0kb downstream 5.0kb downstream 13247 true Scaffold4396: 89095-102341 Capsella grandiflora
Cagra.4396s0026 5.0kb downstream 5.0kb downstream 5000 false Scaffold4396: 97342-102341 Capsella grandiflora
Cagra.4396s0026 10.0kb upstream 10.0kb upstream 18247 true Scaffold4396: 79095-97341 Capsella grandiflora
Cagra.4396s0026 10.0kb upstream 10.0kb upstream 10000 false Scaffold4396: 79095-89094 Capsella grandiflora
Cagra.4396s0026 10.0kb downstream 10.0kb downstream 18247 true Scaffold4396: 89095-107341 Capsella grandiflora
Cagra.4396s0026 10.0kb downstream 10.0kb downstream 10000 false Scaffold4396: 97342-107341 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371475 5261 Brassicaceae View MSA
123827470 5264 Brassicales-Malvales View MSA
124351218 5266 SBM View MSA
124242854 5268 Malvidae View MSA
124063556 5270 Rosid View MSA
123740343 5271 Pentapetalae View MSA
122788318 5272 Eudicot View MSA
122046917 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121344767 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain