Gene : Cagra.4268s0013 C. grandiflora v1.1
Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  13
Name:  ? Cagra.4268s0013 Secondary Identifier:  ? PAC:28917439
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4268s0013 0.5kb upstream 0.5kb upstream 4434 true Scaffold4268: 42040-46473 Capsella grandiflora
Cagra.4268s0013 0.5kb upstream 0.5kb upstream 222 false Scaffold4268: 46252-46473 Capsella grandiflora
Cagra.4268s0013 0.5kb downstream 0.5kb downstream 4712 true Scaffold4268: 41540-46251 Capsella grandiflora
Cagra.4268s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold4268: 41540-42039 Capsella grandiflora
Cagra.4268s0013 1.0kb upstream 1.0kb upstream 4434 true Scaffold4268: 42040-46473 Capsella grandiflora
Cagra.4268s0013 1.0kb upstream 1.0kb upstream 222 false Scaffold4268: 46252-46473 Capsella grandiflora
Cagra.4268s0013 1.0kb downstream 1.0kb downstream 5212 true Scaffold4268: 41040-46251 Capsella grandiflora
Cagra.4268s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold4268: 41040-42039 Capsella grandiflora
Cagra.4268s0013 2.0kb upstream 2.0kb upstream 4434 true Scaffold4268: 42040-46473 Capsella grandiflora
Cagra.4268s0013 2.0kb upstream 2.0kb upstream 222 false Scaffold4268: 46252-46473 Capsella grandiflora
Cagra.4268s0013 2.0kb downstream 2.0kb downstream 6212 true Scaffold4268: 40040-46251 Capsella grandiflora
Cagra.4268s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold4268: 40040-42039 Capsella grandiflora
Cagra.4268s0013 5.0kb upstream 5.0kb upstream 4434 true Scaffold4268: 42040-46473 Capsella grandiflora
Cagra.4268s0013 5.0kb upstream 5.0kb upstream 222 false Scaffold4268: 46252-46473 Capsella grandiflora
Cagra.4268s0013 5.0kb downstream 5.0kb downstream 9212 true Scaffold4268: 37040-46251 Capsella grandiflora
Cagra.4268s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold4268: 37040-42039 Capsella grandiflora
Cagra.4268s0013 10.0kb upstream 10.0kb upstream 4434 true Scaffold4268: 42040-46473 Capsella grandiflora
Cagra.4268s0013 10.0kb upstream 10.0kb upstream 222 false Scaffold4268: 46252-46473 Capsella grandiflora
Cagra.4268s0013 10.0kb downstream 10.0kb downstream 14212 true Scaffold4268: 32040-46251 Capsella grandiflora
Cagra.4268s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold4268: 32040-42039 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041314 5273 Angiosperm View MSA
122364825 5261 Brassicaceae View MSA
123832003 5264 Brassicales-Malvales View MSA
124343675 5266 SBM View MSA
124250397 5268 Malvidae View MSA
124068700 5270 Rosid View MSA
123737684 5271 Pentapetalae View MSA
122792616 5272 Eudicot View MSA
121345226 5274 Embryophyte View MSA
123424186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain