Gene : Cagra.4205s0005 C. grandiflora v1.1
Defline:  (1 of 54) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  5
Name:  ? Cagra.4205s0005 Secondary Identifier:  ? PAC:28919399
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4205s0005 0.5kb upstream 0.5kb upstream 3232 true Scaffold4205: 24460-27691 Capsella grandiflora
Cagra.4205s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold4205: 27192-27691 Capsella grandiflora
Cagra.4205s0005 0.5kb downstream 0.5kb downstream 3232 true Scaffold4205: 23960-27191 Capsella grandiflora
Cagra.4205s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold4205: 23960-24459 Capsella grandiflora
Cagra.4205s0005 1.0kb upstream 1.0kb upstream 3732 true Scaffold4205: 24460-28191 Capsella grandiflora
Cagra.4205s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold4205: 27192-28191 Capsella grandiflora
Cagra.4205s0005 1.0kb downstream 1.0kb downstream 3732 true Scaffold4205: 23460-27191 Capsella grandiflora
Cagra.4205s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold4205: 23460-24459 Capsella grandiflora
Cagra.4205s0005 2.0kb upstream 2.0kb upstream 4732 true Scaffold4205: 24460-29191 Capsella grandiflora
Cagra.4205s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold4205: 27192-29191 Capsella grandiflora
Cagra.4205s0005 2.0kb downstream 2.0kb downstream 4732 true Scaffold4205: 22460-27191 Capsella grandiflora
Cagra.4205s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold4205: 22460-24459 Capsella grandiflora
Cagra.4205s0005 5.0kb upstream 5.0kb upstream 7732 true Scaffold4205: 24460-32191 Capsella grandiflora
Cagra.4205s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold4205: 27192-32191 Capsella grandiflora
Cagra.4205s0005 5.0kb downstream 5.0kb downstream 7732 true Scaffold4205: 19460-27191 Capsella grandiflora
Cagra.4205s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold4205: 19460-24459 Capsella grandiflora
Cagra.4205s0005 10.0kb upstream 10.0kb upstream 12732 true Scaffold4205: 24460-37191 Capsella grandiflora
Cagra.4205s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold4205: 27192-37191 Capsella grandiflora
Cagra.4205s0005 10.0kb downstream 10.0kb downstream 12732 true Scaffold4205: 14460-27191 Capsella grandiflora
Cagra.4205s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold4205: 14460-24459 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333736 5261 Brassicaceae Singleton cluster - no MSA
123838324 5264 Brassicales-Malvales View MSA
124346837 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain