Gene : Cagra.5120s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22773:SF88 - NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 Genomic Order:  13
Name:  ? Cagra.5120s0013 Secondary Identifier:  ? PAC:28904239
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3781 Capsella grandiflora pathologic  
Cgrandiflora PWY-4302 Capsella grandiflora pathologic  
Cgrandiflora PWY-5083 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5120s0013 0.5kb upstream 0.5kb upstream 10226 true Scaffold5120: 39054-49279 Capsella grandiflora
Cagra.5120s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold5120: 39054-39553 Capsella grandiflora
Cagra.5120s0013 0.5kb downstream 0.5kb downstream 10226 true Scaffold5120: 39554-49779 Capsella grandiflora
Cagra.5120s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold5120: 49280-49779 Capsella grandiflora
Cagra.5120s0013 1.0kb upstream 1.0kb upstream 10726 true Scaffold5120: 38554-49279 Capsella grandiflora
Cagra.5120s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold5120: 38554-39553 Capsella grandiflora
Cagra.5120s0013 1.0kb downstream 1.0kb downstream 10726 true Scaffold5120: 39554-50279 Capsella grandiflora
Cagra.5120s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold5120: 49280-50279 Capsella grandiflora
Cagra.5120s0013 2.0kb upstream 2.0kb upstream 11726 true Scaffold5120: 37554-49279 Capsella grandiflora
Cagra.5120s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold5120: 37554-39553 Capsella grandiflora
Cagra.5120s0013 2.0kb downstream 2.0kb downstream 11726 true Scaffold5120: 39554-51279 Capsella grandiflora
Cagra.5120s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold5120: 49280-51279 Capsella grandiflora
Cagra.5120s0013 5.0kb upstream 5.0kb upstream 14726 true Scaffold5120: 34554-49279 Capsella grandiflora
Cagra.5120s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold5120: 34554-39553 Capsella grandiflora
Cagra.5120s0013 5.0kb downstream 5.0kb downstream 14726 true Scaffold5120: 39554-54279 Capsella grandiflora
Cagra.5120s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold5120: 49280-54279 Capsella grandiflora
Cagra.5120s0013 10.0kb upstream 10.0kb upstream 19726 true Scaffold5120: 29554-49279 Capsella grandiflora
Cagra.5120s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold5120: 29554-39553 Capsella grandiflora
Cagra.5120s0013 10.0kb downstream 10.0kb downstream 19726 true Scaffold5120: 39554-59279 Capsella grandiflora
Cagra.5120s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold5120: 49280-59279 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338757 5261 Brassicaceae View MSA
123779303 5264 Brassicales-Malvales View MSA
124277631 5266 SBM View MSA
124252475 5268 Malvidae View MSA
124037990 5270 Rosid View MSA
123751284 5271 Pentapetalae View MSA
122795690 5272 Eudicot View MSA
122049707 5273 Angiosperm View MSA
121351606 5274 Embryophyte View MSA
123428700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain