Gene : Cagra.5224s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12313:SF12 - RING ZINC FINGER PROTEIN-RELATED Genomic Order:  6
Name:  ? Cagra.5224s0006 Secondary Identifier:  ? PAC:28912966
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5224s0006 0.5kb upstream 0.5kb upstream 1805 true Scaffold5224: 25353-27157 Capsella grandiflora
Cagra.5224s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold5224: 25353-25852 Capsella grandiflora
Cagra.5224s0006 0.5kb downstream 0.5kb downstream 1805 true Scaffold5224: 25853-27657 Capsella grandiflora
Cagra.5224s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold5224: 27158-27657 Capsella grandiflora
Cagra.5224s0006 1.0kb upstream 1.0kb upstream 2305 true Scaffold5224: 24853-27157 Capsella grandiflora
Cagra.5224s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold5224: 24853-25852 Capsella grandiflora
Cagra.5224s0006 1.0kb downstream 1.0kb downstream 2305 true Scaffold5224: 25853-28157 Capsella grandiflora
Cagra.5224s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold5224: 27158-28157 Capsella grandiflora
Cagra.5224s0006 2.0kb upstream 2.0kb upstream 3305 true Scaffold5224: 23853-27157 Capsella grandiflora
Cagra.5224s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold5224: 23853-25852 Capsella grandiflora
Cagra.5224s0006 2.0kb downstream 2.0kb downstream 3305 true Scaffold5224: 25853-29157 Capsella grandiflora
Cagra.5224s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold5224: 27158-29157 Capsella grandiflora
Cagra.5224s0006 5.0kb upstream 5.0kb upstream 6305 true Scaffold5224: 20853-27157 Capsella grandiflora
Cagra.5224s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold5224: 20853-25852 Capsella grandiflora
Cagra.5224s0006 5.0kb downstream 5.0kb downstream 6305 true Scaffold5224: 25853-32157 Capsella grandiflora
Cagra.5224s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold5224: 27158-32157 Capsella grandiflora
Cagra.5224s0006 10.0kb upstream 10.0kb upstream 11305 true Scaffold5224: 15853-27157 Capsella grandiflora
Cagra.5224s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold5224: 15853-25852 Capsella grandiflora
Cagra.5224s0006 10.0kb downstream 10.0kb downstream 11305 true Scaffold5224: 25853-37157 Capsella grandiflora
Cagra.5224s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold5224: 27158-37157 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363032 5261 Brassicaceae View MSA
123827533 5264 Brassicales-Malvales View MSA
124340698 5266 SBM View MSA
124252660 5268 Malvidae View MSA
124066658 5270 Rosid View MSA
123750017 5271 Pentapetalae View MSA
122793132 5272 Eudicot View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain