Gene : Cagra.4894s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11614:SF96 - ALPHA/BETA FOLD HYDROLASE FAMILY PROTEIN Genomic Order:  3
Name:  ? Cagra.4894s0003 Secondary Identifier:  ? PAC:28894892
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7420 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4894s0003 0.5kb upstream 0.5kb upstream 4115 true Scaffold4894: 13206-17320 Capsella grandiflora
Cagra.4894s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold4894: 16821-17320 Capsella grandiflora
Cagra.4894s0003 0.5kb downstream 0.5kb downstream 4115 true Scaffold4894: 12706-16820 Capsella grandiflora
Cagra.4894s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold4894: 12706-13205 Capsella grandiflora
Cagra.4894s0003 1.0kb upstream 1.0kb upstream 4615 true Scaffold4894: 13206-17820 Capsella grandiflora
Cagra.4894s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold4894: 16821-17820 Capsella grandiflora
Cagra.4894s0003 1.0kb downstream 1.0kb downstream 4615 true Scaffold4894: 12206-16820 Capsella grandiflora
Cagra.4894s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold4894: 12206-13205 Capsella grandiflora
Cagra.4894s0003 2.0kb upstream 2.0kb upstream 5615 true Scaffold4894: 13206-18820 Capsella grandiflora
Cagra.4894s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold4894: 16821-18820 Capsella grandiflora
Cagra.4894s0003 2.0kb downstream 2.0kb downstream 5615 true Scaffold4894: 11206-16820 Capsella grandiflora
Cagra.4894s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold4894: 11206-13205 Capsella grandiflora
Cagra.4894s0003 5.0kb upstream 5.0kb upstream 8615 true Scaffold4894: 13206-21820 Capsella grandiflora
Cagra.4894s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold4894: 16821-21820 Capsella grandiflora
Cagra.4894s0003 5.0kb downstream 5.0kb downstream 8615 true Scaffold4894: 8206-16820 Capsella grandiflora
Cagra.4894s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold4894: 8206-13205 Capsella grandiflora
Cagra.4894s0003 10.0kb upstream 10.0kb upstream 13615 true Scaffold4894: 13206-26820 Capsella grandiflora
Cagra.4894s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold4894: 16821-26820 Capsella grandiflora
Cagra.4894s0003 10.0kb downstream 10.0kb downstream 13615 true Scaffold4894: 3206-16820 Capsella grandiflora
Cagra.4894s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold4894: 3206-13205 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363817 5261 Brassicaceae View MSA
123833059 5264 Brassicales-Malvales View MSA
124321840 5266 SBM View MSA
124247266 5268 Malvidae View MSA
124065565 5270 Rosid View MSA
123753493 5271 Pentapetalae View MSA
122796454 5272 Eudicot View MSA
122051494 5273 Angiosperm View MSA
121350082 5274 Embryophyte View MSA
123428617 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain