Gene : Cagra.4894s0030 C. grandiflora v1.1
Defline:  (1 of 3) PTHR22880:SF172 - TRANSCRIPTION FACTOR GTE3, CHLOROPLASTIC-RELATED Genomic Order:  30
Name:  ? Cagra.4894s0030 Secondary Identifier:  ? PAC:28894897
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4894s0030 0.5kb upstream 0.5kb upstream 2685 true Scaffold4894: 127444-130128 Capsella grandiflora
Cagra.4894s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold4894: 127444-127943 Capsella grandiflora
Cagra.4894s0030 0.5kb downstream 0.5kb downstream 2685 true Scaffold4894: 127944-130628 Capsella grandiflora
Cagra.4894s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold4894: 130129-130628 Capsella grandiflora
Cagra.4894s0030 1.0kb upstream 1.0kb upstream 3185 true Scaffold4894: 126944-130128 Capsella grandiflora
Cagra.4894s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold4894: 126944-127943 Capsella grandiflora
Cagra.4894s0030 1.0kb downstream 1.0kb downstream 3185 true Scaffold4894: 127944-131128 Capsella grandiflora
Cagra.4894s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold4894: 130129-131128 Capsella grandiflora
Cagra.4894s0030 2.0kb upstream 2.0kb upstream 4185 true Scaffold4894: 125944-130128 Capsella grandiflora
Cagra.4894s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold4894: 125944-127943 Capsella grandiflora
Cagra.4894s0030 2.0kb downstream 2.0kb downstream 4185 true Scaffold4894: 127944-132128 Capsella grandiflora
Cagra.4894s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold4894: 130129-132128 Capsella grandiflora
Cagra.4894s0030 5.0kb upstream 5.0kb upstream 7185 true Scaffold4894: 122944-130128 Capsella grandiflora
Cagra.4894s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold4894: 122944-127943 Capsella grandiflora
Cagra.4894s0030 5.0kb downstream 5.0kb downstream 7185 true Scaffold4894: 127944-135128 Capsella grandiflora
Cagra.4894s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold4894: 130129-135128 Capsella grandiflora
Cagra.4894s0030 10.0kb upstream 10.0kb upstream 12185 true Scaffold4894: 117944-130128 Capsella grandiflora
Cagra.4894s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold4894: 117944-127943 Capsella grandiflora
Cagra.4894s0030 10.0kb downstream 10.0kb downstream 11636 true Scaffold4894: 127944-139579 Capsella grandiflora
Cagra.4894s0030 10.0kb downstream 10.0kb downstream 9451 false Scaffold4894: 130129-139579 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380648 5261 Brassicaceae View MSA
123802827 5264 Brassicales-Malvales View MSA
124299991 5266 SBM View MSA
124253810 5268 Malvidae View MSA
124051419 5270 Rosid View MSA
123750447 5271 Pentapetalae View MSA
122794064 5272 Eudicot View MSA
122046365 5273 Angiosperm View MSA
123429103 5275 Viridiplantae View MSA
121348953 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain