Gene : Cagra.4849s0011 C. grandiflora v1.1
Defline:  (1 of 1) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  11
Name:  ? Cagra.4849s0011 Secondary Identifier:  ? PAC:28898024
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CAROTENOID-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6475 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4849s0011 0.5kb upstream 0.5kb upstream 3795 true Scaffold4849: 47102-50896 Capsella grandiflora
Cagra.4849s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold4849: 47102-47601 Capsella grandiflora
Cagra.4849s0011 0.5kb downstream 0.5kb downstream 3795 true Scaffold4849: 47602-51396 Capsella grandiflora
Cagra.4849s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold4849: 50897-51396 Capsella grandiflora
Cagra.4849s0011 1.0kb upstream 1.0kb upstream 4295 true Scaffold4849: 46602-50896 Capsella grandiflora
Cagra.4849s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold4849: 46602-47601 Capsella grandiflora
Cagra.4849s0011 1.0kb downstream 1.0kb downstream 4295 true Scaffold4849: 47602-51896 Capsella grandiflora
Cagra.4849s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold4849: 50897-51896 Capsella grandiflora
Cagra.4849s0011 2.0kb upstream 2.0kb upstream 5295 true Scaffold4849: 45602-50896 Capsella grandiflora
Cagra.4849s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold4849: 45602-47601 Capsella grandiflora
Cagra.4849s0011 2.0kb downstream 2.0kb downstream 5295 true Scaffold4849: 47602-52896 Capsella grandiflora
Cagra.4849s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold4849: 50897-52896 Capsella grandiflora
Cagra.4849s0011 5.0kb upstream 5.0kb upstream 8295 true Scaffold4849: 42602-50896 Capsella grandiflora
Cagra.4849s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold4849: 42602-47601 Capsella grandiflora
Cagra.4849s0011 5.0kb downstream 5.0kb downstream 8295 true Scaffold4849: 47602-55896 Capsella grandiflora
Cagra.4849s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold4849: 50897-55896 Capsella grandiflora
Cagra.4849s0011 10.0kb upstream 10.0kb upstream 13295 true Scaffold4849: 37602-50896 Capsella grandiflora
Cagra.4849s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold4849: 37602-47601 Capsella grandiflora
Cagra.4849s0011 10.0kb downstream 10.0kb downstream 13295 true Scaffold4849: 47602-60896 Capsella grandiflora
Cagra.4849s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold4849: 50897-60896 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122366550 5261 Brassicaceae View MSA
123829809 5264 Brassicales-Malvales View MSA
124345575 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain