Gene : Cagra.4553s0023 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  23
Name:  ? Cagra.4553s0023 Secondary Identifier:  ? PAC:28907102
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5980 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4553s0023 0.5kb upstream 0.5kb upstream 3388 true Scaffold4553: 104870-108257 Capsella grandiflora
Cagra.4553s0023 0.5kb upstream 0.5kb upstream 500 false Scaffold4553: 104870-105369 Capsella grandiflora
Cagra.4553s0023 0.5kb downstream 0.5kb downstream 3388 true Scaffold4553: 105370-108757 Capsella grandiflora
Cagra.4553s0023 0.5kb downstream 0.5kb downstream 500 false Scaffold4553: 108258-108757 Capsella grandiflora
Cagra.4553s0023 1.0kb upstream 1.0kb upstream 3888 true Scaffold4553: 104370-108257 Capsella grandiflora
Cagra.4553s0023 1.0kb upstream 1.0kb upstream 1000 false Scaffold4553: 104370-105369 Capsella grandiflora
Cagra.4553s0023 1.0kb downstream 1.0kb downstream 3888 true Scaffold4553: 105370-109257 Capsella grandiflora
Cagra.4553s0023 1.0kb downstream 1.0kb downstream 1000 false Scaffold4553: 108258-109257 Capsella grandiflora
Cagra.4553s0023 2.0kb upstream 2.0kb upstream 4888 true Scaffold4553: 103370-108257 Capsella grandiflora
Cagra.4553s0023 2.0kb upstream 2.0kb upstream 2000 false Scaffold4553: 103370-105369 Capsella grandiflora
Cagra.4553s0023 2.0kb downstream 2.0kb downstream 4888 true Scaffold4553: 105370-110257 Capsella grandiflora
Cagra.4553s0023 2.0kb downstream 2.0kb downstream 2000 false Scaffold4553: 108258-110257 Capsella grandiflora
Cagra.4553s0023 5.0kb upstream 5.0kb upstream 7888 true Scaffold4553: 100370-108257 Capsella grandiflora
Cagra.4553s0023 5.0kb upstream 5.0kb upstream 5000 false Scaffold4553: 100370-105369 Capsella grandiflora
Cagra.4553s0023 5.0kb downstream 5.0kb downstream 7888 true Scaffold4553: 105370-113257 Capsella grandiflora
Cagra.4553s0023 5.0kb downstream 5.0kb downstream 5000 false Scaffold4553: 108258-113257 Capsella grandiflora
Cagra.4553s0023 10.0kb upstream 10.0kb upstream 12888 true Scaffold4553: 95370-108257 Capsella grandiflora
Cagra.4553s0023 10.0kb upstream 10.0kb upstream 10000 false Scaffold4553: 95370-105369 Capsella grandiflora
Cagra.4553s0023 10.0kb downstream 10.0kb downstream 12888 true Scaffold4553: 105370-118257 Capsella grandiflora
Cagra.4553s0023 10.0kb downstream 10.0kb downstream 10000 false Scaffold4553: 108258-118257 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361554 5261 Brassicaceae View MSA
123831717 5264 Brassicales-Malvales View MSA
124343729 5266 SBM View MSA
124242312 5268 Malvidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain