Gene : Cagra.6254s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR15495//PTHR15495:SF17 - NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED Genomic Order:  13
Name:  ? Cagra.6254s0013 Secondary Identifier:  ? PAC:28897594
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6254s0013 0.5kb upstream 0.5kb upstream 2121 true Scaffold6254: 32896-35016 Capsella grandiflora
Cagra.6254s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold6254: 32896-33395 Capsella grandiflora
Cagra.6254s0013 0.5kb downstream 0.5kb downstream 2121 true Scaffold6254: 33396-35516 Capsella grandiflora
Cagra.6254s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold6254: 35017-35516 Capsella grandiflora
Cagra.6254s0013 1.0kb upstream 1.0kb upstream 2621 true Scaffold6254: 32396-35016 Capsella grandiflora
Cagra.6254s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold6254: 32396-33395 Capsella grandiflora
Cagra.6254s0013 1.0kb downstream 1.0kb downstream 2621 true Scaffold6254: 33396-36016 Capsella grandiflora
Cagra.6254s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold6254: 35017-36016 Capsella grandiflora
Cagra.6254s0013 2.0kb upstream 2.0kb upstream 3621 true Scaffold6254: 31396-35016 Capsella grandiflora
Cagra.6254s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold6254: 31396-33395 Capsella grandiflora
Cagra.6254s0013 2.0kb downstream 2.0kb downstream 3621 true Scaffold6254: 33396-37016 Capsella grandiflora
Cagra.6254s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold6254: 35017-37016 Capsella grandiflora
Cagra.6254s0013 5.0kb upstream 5.0kb upstream 6621 true Scaffold6254: 28396-35016 Capsella grandiflora
Cagra.6254s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold6254: 28396-33395 Capsella grandiflora
Cagra.6254s0013 5.0kb downstream 5.0kb downstream 6621 true Scaffold6254: 33396-40016 Capsella grandiflora
Cagra.6254s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold6254: 35017-40016 Capsella grandiflora
Cagra.6254s0013 10.0kb upstream 10.0kb upstream 11621 true Scaffold6254: 23396-35016 Capsella grandiflora
Cagra.6254s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold6254: 23396-33395 Capsella grandiflora
Cagra.6254s0013 10.0kb downstream 10.0kb downstream 11621 true Scaffold6254: 33396-45016 Capsella grandiflora
Cagra.6254s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold6254: 35017-45016 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367163 5261 Brassicaceae View MSA
123832535 5264 Brassicales-Malvales View MSA
124339707 5266 SBM View MSA
124240599 5268 Malvidae View MSA
124065569 5270 Rosid View MSA
123747210 5271 Pentapetalae View MSA
122789939 5272 Eudicot View MSA
122045656 5273 Angiosperm View MSA
121347339 5274 Embryophyte View MSA
123426841 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain