Gene : Cagra.5862s0020 C. grandiflora v1.1
Defline:  (1 of 2) PTHR18952:SF100 - ALPHA CARBONIC ANHYDRASE 5 Genomic Order:  20
Name:  ? Cagra.5862s0020 Secondary Identifier:  ? PAC:28920110
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CYANCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-241 Capsella grandiflora pathologic  
Cgrandiflora PWY-7115 Capsella grandiflora pathologic  
Cgrandiflora PWY-7117 Capsella grandiflora pathologic  
Cgrandiflora PWYQT-4429 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5862s0020 0.5kb upstream 0.5kb upstream 2359 true Scaffold5862: 56868-59226 Capsella grandiflora
Cagra.5862s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold5862: 58727-59226 Capsella grandiflora
Cagra.5862s0020 0.5kb downstream 0.5kb downstream 2359 true Scaffold5862: 56368-58726 Capsella grandiflora
Cagra.5862s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold5862: 56368-56867 Capsella grandiflora
Cagra.5862s0020 1.0kb upstream 1.0kb upstream 2859 true Scaffold5862: 56868-59726 Capsella grandiflora
Cagra.5862s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold5862: 58727-59726 Capsella grandiflora
Cagra.5862s0020 1.0kb downstream 1.0kb downstream 2859 true Scaffold5862: 55868-58726 Capsella grandiflora
Cagra.5862s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold5862: 55868-56867 Capsella grandiflora
Cagra.5862s0020 2.0kb upstream 2.0kb upstream 3859 true Scaffold5862: 56868-60726 Capsella grandiflora
Cagra.5862s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold5862: 58727-60726 Capsella grandiflora
Cagra.5862s0020 2.0kb downstream 2.0kb downstream 3859 true Scaffold5862: 54868-58726 Capsella grandiflora
Cagra.5862s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold5862: 54868-56867 Capsella grandiflora
Cagra.5862s0020 5.0kb upstream 5.0kb upstream 6859 true Scaffold5862: 56868-63726 Capsella grandiflora
Cagra.5862s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold5862: 58727-63726 Capsella grandiflora
Cagra.5862s0020 5.0kb downstream 5.0kb downstream 6859 true Scaffold5862: 51868-58726 Capsella grandiflora
Cagra.5862s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold5862: 51868-56867 Capsella grandiflora
Cagra.5862s0020 10.0kb upstream 10.0kb upstream 11859 true Scaffold5862: 56868-68726 Capsella grandiflora
Cagra.5862s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold5862: 58727-68726 Capsella grandiflora
Cagra.5862s0020 10.0kb downstream 10.0kb downstream 11859 true Scaffold5862: 46868-58726 Capsella grandiflora
Cagra.5862s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold5862: 46868-56867 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121512254 5273 Angiosperm View MSA
122381127 5261 Brassicaceae View MSA
123803069 5264 Brassicales-Malvales View MSA
124300206 5266 SBM View MSA
124151442 5268 Malvidae View MSA
123876872 5270 Rosid View MSA
123460487 5271 Pentapetalae View MSA
122495859 5272 Eudicot View MSA
121351630 5274 Embryophyte View MSA
123428273 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain