Gene : Cagra.5575s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31301:SF12 - LOB DOMAIN-CONTAINING PROTEIN 25 Genomic Order:  4
Name:  ? Cagra.5575s0004 Secondary Identifier:  ? PAC:28903651
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5575s0004 0.5kb upstream 0.5kb upstream 2762 true Scaffold5575: 19737-22498 Capsella grandiflora
Cagra.5575s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold5575: 21999-22498 Capsella grandiflora
Cagra.5575s0004 0.5kb downstream 0.5kb downstream 2762 true Scaffold5575: 19237-21998 Capsella grandiflora
Cagra.5575s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold5575: 19237-19736 Capsella grandiflora
Cagra.5575s0004 1.0kb upstream 1.0kb upstream 3262 true Scaffold5575: 19737-22998 Capsella grandiflora
Cagra.5575s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold5575: 21999-22998 Capsella grandiflora
Cagra.5575s0004 1.0kb downstream 1.0kb downstream 3262 true Scaffold5575: 18737-21998 Capsella grandiflora
Cagra.5575s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold5575: 18737-19736 Capsella grandiflora
Cagra.5575s0004 2.0kb upstream 2.0kb upstream 4262 true Scaffold5575: 19737-23998 Capsella grandiflora
Cagra.5575s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold5575: 21999-23998 Capsella grandiflora
Cagra.5575s0004 2.0kb downstream 2.0kb downstream 4262 true Scaffold5575: 17737-21998 Capsella grandiflora
Cagra.5575s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold5575: 17737-19736 Capsella grandiflora
Cagra.5575s0004 5.0kb upstream 5.0kb upstream 7262 true Scaffold5575: 19737-26998 Capsella grandiflora
Cagra.5575s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold5575: 21999-26998 Capsella grandiflora
Cagra.5575s0004 5.0kb downstream 5.0kb downstream 7262 true Scaffold5575: 14737-21998 Capsella grandiflora
Cagra.5575s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold5575: 14737-19736 Capsella grandiflora
Cagra.5575s0004 10.0kb upstream 10.0kb upstream 12262 true Scaffold5575: 19737-31998 Capsella grandiflora
Cagra.5575s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold5575: 21999-31998 Capsella grandiflora
Cagra.5575s0004 10.0kb downstream 10.0kb downstream 12262 true Scaffold5575: 9737-21998 Capsella grandiflora
Cagra.5575s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold5575: 9737-19736 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379618 5261 Brassicaceae View MSA
123839079 5264 Brassicales-Malvales View MSA
124339115 5266 SBM View MSA
124244636 5268 Malvidae View MSA
124070294 5270 Rosid View MSA
123752210 5271 Pentapetalae View MSA
122796223 5272 Eudicot View MSA
122048133 5273 Angiosperm View MSA
121350574 5274 Embryophyte View MSA
123381803 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain