Gene : Cagra.5416s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  1
Name:  ? Cagra.5416s0001 Secondary Identifier:  ? PAC:28902067
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5409 Capsella grandiflora pathologic  
Cgrandiflora PWY-5410 Capsella grandiflora pathologic  
Cgrandiflora PWY-735 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5416s0001 0.5kb upstream 0.5kb upstream 2732 true Scaffold5416: 1-2732 Capsella grandiflora
Cagra.5416s0001 0.5kb upstream 0.5kb upstream 1 false Scaffold5416: 1-1 Capsella grandiflora
Cagra.5416s0001 0.5kb downstream 0.5kb downstream 3231 true Scaffold5416: 2-3232 Capsella grandiflora
Cagra.5416s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold5416: 2733-3232 Capsella grandiflora
Cagra.5416s0001 1.0kb upstream 1.0kb upstream 2732 true Scaffold5416: 1-2732 Capsella grandiflora
Cagra.5416s0001 1.0kb upstream 1.0kb upstream 1 false Scaffold5416: 1-1 Capsella grandiflora
Cagra.5416s0001 1.0kb downstream 1.0kb downstream 3731 true Scaffold5416: 2-3732 Capsella grandiflora
Cagra.5416s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold5416: 2733-3732 Capsella grandiflora
Cagra.5416s0001 2.0kb upstream 2.0kb upstream 2732 true Scaffold5416: 1-2732 Capsella grandiflora
Cagra.5416s0001 2.0kb upstream 2.0kb upstream 1 false Scaffold5416: 1-1 Capsella grandiflora
Cagra.5416s0001 2.0kb downstream 2.0kb downstream 4731 true Scaffold5416: 2-4732 Capsella grandiflora
Cagra.5416s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold5416: 2733-4732 Capsella grandiflora
Cagra.5416s0001 5.0kb upstream 5.0kb upstream 2732 true Scaffold5416: 1-2732 Capsella grandiflora
Cagra.5416s0001 5.0kb upstream 5.0kb upstream 1 false Scaffold5416: 1-1 Capsella grandiflora
Cagra.5416s0001 5.0kb downstream 5.0kb downstream 7731 true Scaffold5416: 2-7732 Capsella grandiflora
Cagra.5416s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold5416: 2733-7732 Capsella grandiflora
Cagra.5416s0001 10.0kb upstream 10.0kb upstream 2732 true Scaffold5416: 1-2732 Capsella grandiflora
Cagra.5416s0001 10.0kb upstream 10.0kb upstream 1 false Scaffold5416: 1-1 Capsella grandiflora
Cagra.5416s0001 10.0kb downstream 10.0kb downstream 12731 true Scaffold5416: 2-12732 Capsella grandiflora
Cagra.5416s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold5416: 2733-12732 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122382091 5261 Brassicaceae View MSA
123839661 5264 Brassicales-Malvales View MSA
124340250 5266 SBM View MSA
124236928 5268 Malvidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain