Gene : Cagra.6777s0016 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11685:SF119 - E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED Genomic Order:  16
Name:  ? Cagra.6777s0016 Secondary Identifier:  ? PAC:28894319
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6777s0016 0.5kb upstream 0.5kb upstream 3615 true Scaffold6777: 51676-55290 Capsella grandiflora
Cagra.6777s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold6777: 54791-55290 Capsella grandiflora
Cagra.6777s0016 0.5kb downstream 0.5kb downstream 3615 true Scaffold6777: 51176-54790 Capsella grandiflora
Cagra.6777s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold6777: 51176-51675 Capsella grandiflora
Cagra.6777s0016 1.0kb upstream 1.0kb upstream 4115 true Scaffold6777: 51676-55790 Capsella grandiflora
Cagra.6777s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold6777: 54791-55790 Capsella grandiflora
Cagra.6777s0016 1.0kb downstream 1.0kb downstream 4115 true Scaffold6777: 50676-54790 Capsella grandiflora
Cagra.6777s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold6777: 50676-51675 Capsella grandiflora
Cagra.6777s0016 2.0kb upstream 2.0kb upstream 5115 true Scaffold6777: 51676-56790 Capsella grandiflora
Cagra.6777s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold6777: 54791-56790 Capsella grandiflora
Cagra.6777s0016 2.0kb downstream 2.0kb downstream 5115 true Scaffold6777: 49676-54790 Capsella grandiflora
Cagra.6777s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold6777: 49676-51675 Capsella grandiflora
Cagra.6777s0016 5.0kb upstream 5.0kb upstream 8115 true Scaffold6777: 51676-59790 Capsella grandiflora
Cagra.6777s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold6777: 54791-59790 Capsella grandiflora
Cagra.6777s0016 5.0kb downstream 5.0kb downstream 8115 true Scaffold6777: 46676-54790 Capsella grandiflora
Cagra.6777s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold6777: 46676-51675 Capsella grandiflora
Cagra.6777s0016 10.0kb upstream 10.0kb upstream 13115 true Scaffold6777: 51676-64790 Capsella grandiflora
Cagra.6777s0016 10.0kb upstream 10.0kb upstream 10000 false Scaffold6777: 54791-64790 Capsella grandiflora
Cagra.6777s0016 10.0kb downstream 10.0kb downstream 13115 true Scaffold6777: 41676-54790 Capsella grandiflora
Cagra.6777s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold6777: 41676-51675 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366411 5261 Brassicaceae View MSA
123837734 5264 Brassicales-Malvales View MSA
124338764 5266 SBM View MSA
124239816 5268 Malvidae View MSA
124064990 5270 Rosid View MSA
123740641 5271 Pentapetalae View MSA
122792906 5272 Eudicot View MSA
122046859 5273 Angiosperm View MSA
121343815 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain