Gene : Cagra.6594s0019 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31576:SF2 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B Genomic Order:  19
Name:  ? Cagra.6594s0019 Secondary Identifier:  ? PAC:28900899
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6594s0019 0.5kb upstream 0.5kb upstream 1926 true Scaffold6594: 77167-79092 Capsella grandiflora
Cagra.6594s0019 0.5kb upstream 0.5kb upstream 500 false Scaffold6594: 78593-79092 Capsella grandiflora
Cagra.6594s0019 0.5kb downstream 0.5kb downstream 1926 true Scaffold6594: 76667-78592 Capsella grandiflora
Cagra.6594s0019 0.5kb downstream 0.5kb downstream 500 false Scaffold6594: 76667-77166 Capsella grandiflora
Cagra.6594s0019 1.0kb upstream 1.0kb upstream 2426 true Scaffold6594: 77167-79592 Capsella grandiflora
Cagra.6594s0019 1.0kb upstream 1.0kb upstream 1000 false Scaffold6594: 78593-79592 Capsella grandiflora
Cagra.6594s0019 1.0kb downstream 1.0kb downstream 2426 true Scaffold6594: 76167-78592 Capsella grandiflora
Cagra.6594s0019 1.0kb downstream 1.0kb downstream 1000 false Scaffold6594: 76167-77166 Capsella grandiflora
Cagra.6594s0019 2.0kb upstream 2.0kb upstream 3426 true Scaffold6594: 77167-80592 Capsella grandiflora
Cagra.6594s0019 2.0kb upstream 2.0kb upstream 2000 false Scaffold6594: 78593-80592 Capsella grandiflora
Cagra.6594s0019 2.0kb downstream 2.0kb downstream 3426 true Scaffold6594: 75167-78592 Capsella grandiflora
Cagra.6594s0019 2.0kb downstream 2.0kb downstream 2000 false Scaffold6594: 75167-77166 Capsella grandiflora
Cagra.6594s0019 5.0kb upstream 5.0kb upstream 6426 true Scaffold6594: 77167-83592 Capsella grandiflora
Cagra.6594s0019 5.0kb upstream 5.0kb upstream 5000 false Scaffold6594: 78593-83592 Capsella grandiflora
Cagra.6594s0019 5.0kb downstream 5.0kb downstream 6426 true Scaffold6594: 72167-78592 Capsella grandiflora
Cagra.6594s0019 5.0kb downstream 5.0kb downstream 5000 false Scaffold6594: 72167-77166 Capsella grandiflora
Cagra.6594s0019 10.0kb upstream 10.0kb upstream 11426 true Scaffold6594: 77167-88592 Capsella grandiflora
Cagra.6594s0019 10.0kb upstream 10.0kb upstream 10000 false Scaffold6594: 78593-88592 Capsella grandiflora
Cagra.6594s0019 10.0kb downstream 10.0kb downstream 11426 true Scaffold6594: 67167-78592 Capsella grandiflora
Cagra.6594s0019 10.0kb downstream 10.0kb downstream 10000 false Scaffold6594: 67167-77166 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380426 5261 Brassicaceae View MSA
123802709 5264 Brassicales-Malvales View MSA
124299881 5266 SBM View MSA
124151186 5268 Malvidae View MSA
123876674 5270 Rosid View MSA
123742102 5271 Pentapetalae View MSA
122796533 5272 Eudicot View MSA
122050673 5273 Angiosperm View MSA
121345414 5274 Embryophyte View MSA
123427215 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain