Gene : Cagra.8372s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10782:SF34 - E3 SUMO-PROTEIN LIGASE SIZ1 Genomic Order:  3
Name:  ? Cagra.8372s0003 Secondary Identifier:  ? PAC:28916043
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8372s0003 0.5kb upstream 0.5kb upstream 6476 true Scaffold8372: 8243-14718 Capsella grandiflora
Cagra.8372s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold8372: 14219-14718 Capsella grandiflora
Cagra.8372s0003 0.5kb downstream 0.5kb downstream 6476 true Scaffold8372: 7743-14218 Capsella grandiflora
Cagra.8372s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold8372: 7743-8242 Capsella grandiflora
Cagra.8372s0003 1.0kb upstream 1.0kb upstream 6976 true Scaffold8372: 8243-15218 Capsella grandiflora
Cagra.8372s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold8372: 14219-15218 Capsella grandiflora
Cagra.8372s0003 1.0kb downstream 1.0kb downstream 6976 true Scaffold8372: 7243-14218 Capsella grandiflora
Cagra.8372s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold8372: 7243-8242 Capsella grandiflora
Cagra.8372s0003 2.0kb upstream 2.0kb upstream 7976 true Scaffold8372: 8243-16218 Capsella grandiflora
Cagra.8372s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold8372: 14219-16218 Capsella grandiflora
Cagra.8372s0003 2.0kb downstream 2.0kb downstream 7976 true Scaffold8372: 6243-14218 Capsella grandiflora
Cagra.8372s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold8372: 6243-8242 Capsella grandiflora
Cagra.8372s0003 5.0kb upstream 5.0kb upstream 10976 true Scaffold8372: 8243-19218 Capsella grandiflora
Cagra.8372s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold8372: 14219-19218 Capsella grandiflora
Cagra.8372s0003 5.0kb downstream 5.0kb downstream 10976 true Scaffold8372: 3243-14218 Capsella grandiflora
Cagra.8372s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold8372: 3243-8242 Capsella grandiflora
Cagra.8372s0003 10.0kb upstream 10.0kb upstream 15976 true Scaffold8372: 8243-24218 Capsella grandiflora
Cagra.8372s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold8372: 14219-24218 Capsella grandiflora
Cagra.8372s0003 10.0kb downstream 10.0kb downstream 14218 true Scaffold8372: 1-14218 Capsella grandiflora
Cagra.8372s0003 10.0kb downstream 10.0kb downstream 8242 false Scaffold8372: 1-8242 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370600 5261 Brassicaceae View MSA
123836950 5264 Brassicales-Malvales View MSA
124338996 5266 SBM View MSA
124242030 5268 Malvidae View MSA
124063048 5270 Rosid View MSA
123737039 5271 Pentapetalae View MSA
122786497 5272 Eudicot View MSA
122046306 5273 Angiosperm View MSA
121350287 5274 Embryophyte View MSA
123426833 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain