Gene : Cagra.8085s0003 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11140 - PRE-MRNA SPLICING FACTOR PRP8 Genomic Order:  3
Name:  ? Cagra.8085s0003 Secondary Identifier:  ? PAC:28906781
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8085s0003 0.5kb upstream 0.5kb upstream 7828 true Scaffold8085: 11041-18868 Capsella grandiflora
Cagra.8085s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold8085: 18369-18868 Capsella grandiflora
Cagra.8085s0003 0.5kb downstream 0.5kb downstream 7828 true Scaffold8085: 10541-18368 Capsella grandiflora
Cagra.8085s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold8085: 10541-11040 Capsella grandiflora
Cagra.8085s0003 1.0kb upstream 1.0kb upstream 8328 true Scaffold8085: 11041-19368 Capsella grandiflora
Cagra.8085s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold8085: 18369-19368 Capsella grandiflora
Cagra.8085s0003 1.0kb downstream 1.0kb downstream 8328 true Scaffold8085: 10041-18368 Capsella grandiflora
Cagra.8085s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold8085: 10041-11040 Capsella grandiflora
Cagra.8085s0003 2.0kb upstream 2.0kb upstream 9328 true Scaffold8085: 11041-20368 Capsella grandiflora
Cagra.8085s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold8085: 18369-20368 Capsella grandiflora
Cagra.8085s0003 2.0kb downstream 2.0kb downstream 9328 true Scaffold8085: 9041-18368 Capsella grandiflora
Cagra.8085s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold8085: 9041-11040 Capsella grandiflora
Cagra.8085s0003 5.0kb upstream 5.0kb upstream 12328 true Scaffold8085: 11041-23368 Capsella grandiflora
Cagra.8085s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold8085: 18369-23368 Capsella grandiflora
Cagra.8085s0003 5.0kb downstream 5.0kb downstream 12328 true Scaffold8085: 6041-18368 Capsella grandiflora
Cagra.8085s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold8085: 6041-11040 Capsella grandiflora
Cagra.8085s0003 10.0kb upstream 10.0kb upstream 17328 true Scaffold8085: 11041-28368 Capsella grandiflora
Cagra.8085s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold8085: 18369-28368 Capsella grandiflora
Cagra.8085s0003 10.0kb downstream 10.0kb downstream 17328 true Scaffold8085: 1041-18368 Capsella grandiflora
Cagra.8085s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold8085: 1041-11040 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121512430 5273 Angiosperm View MSA
122381851 5261 Brassicaceae View MSA
123803490 5264 Brassicales-Malvales View MSA
124300594 5266 SBM View MSA
124151744 5268 Malvidae View MSA
123877116 5270 Rosid View MSA
123460689 5271 Pentapetalae View MSA
122496055 5272 Eudicot View MSA
120785450 5274 Embryophyte View MSA
122827316 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain