Gene : Cagra.7848s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR35703:SF1 - INACTIVE HEME OXYGENASE 2, CHLOROPLASTIC-RELATED Genomic Order:  1
Name:  ? Cagra.7848s0001 Secondary Identifier:  ? PAC:28907570
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5874 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.7848s0001 0.5kb upstream 0.5kb upstream 2390 true Scaffold7848: 294-2683 Capsella grandiflora
Cagra.7848s0001 0.5kb upstream 0.5kb upstream 325 false Scaffold7848: 2359-2683 Capsella grandiflora
Cagra.7848s0001 0.5kb downstream 0.5kb downstream 2358 true Scaffold7848: 1-2358 Capsella grandiflora
Cagra.7848s0001 0.5kb downstream 0.5kb downstream 293 false Scaffold7848: 1-293 Capsella grandiflora
Cagra.7848s0001 1.0kb upstream 1.0kb upstream 2390 true Scaffold7848: 294-2683 Capsella grandiflora
Cagra.7848s0001 1.0kb upstream 1.0kb upstream 325 false Scaffold7848: 2359-2683 Capsella grandiflora
Cagra.7848s0001 1.0kb downstream 1.0kb downstream 2358 true Scaffold7848: 1-2358 Capsella grandiflora
Cagra.7848s0001 1.0kb downstream 1.0kb downstream 293 false Scaffold7848: 1-293 Capsella grandiflora
Cagra.7848s0001 2.0kb upstream 2.0kb upstream 2390 true Scaffold7848: 294-2683 Capsella grandiflora
Cagra.7848s0001 2.0kb upstream 2.0kb upstream 325 false Scaffold7848: 2359-2683 Capsella grandiflora
Cagra.7848s0001 2.0kb downstream 2.0kb downstream 2358 true Scaffold7848: 1-2358 Capsella grandiflora
Cagra.7848s0001 2.0kb downstream 2.0kb downstream 293 false Scaffold7848: 1-293 Capsella grandiflora
Cagra.7848s0001 5.0kb upstream 5.0kb upstream 2390 true Scaffold7848: 294-2683 Capsella grandiflora
Cagra.7848s0001 5.0kb upstream 5.0kb upstream 325 false Scaffold7848: 2359-2683 Capsella grandiflora
Cagra.7848s0001 5.0kb downstream 5.0kb downstream 2358 true Scaffold7848: 1-2358 Capsella grandiflora
Cagra.7848s0001 5.0kb downstream 5.0kb downstream 293 false Scaffold7848: 1-293 Capsella grandiflora
Cagra.7848s0001 10.0kb upstream 10.0kb upstream 2390 true Scaffold7848: 294-2683 Capsella grandiflora
Cagra.7848s0001 10.0kb upstream 10.0kb upstream 325 false Scaffold7848: 2359-2683 Capsella grandiflora
Cagra.7848s0001 10.0kb downstream 10.0kb downstream 2358 true Scaffold7848: 1-2358 Capsella grandiflora
Cagra.7848s0001 10.0kb downstream 10.0kb downstream 293 false Scaffold7848: 1-293 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374362 5261 Brassicaceae View MSA
123837004 5264 Brassicales-Malvales View MSA
124341792 5266 SBM View MSA
124242184 5268 Malvidae View MSA
124063078 5270 Rosid View MSA
123741198 5271 Pentapetalae View MSA
122793273 5272 Eudicot View MSA
122045580 5273 Angiosperm View MSA
121310469 5274 Embryophyte View MSA
123347942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain