Gene : Cagra.7654s0005 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22600:SF16 - BETA-HEXOSAMINIDASE 1 Genomic Order:  5
Name:  ? Cagra.7654s0005 Secondary Identifier:  ? PAC:28893673
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6902 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.7654s0005 0.5kb upstream 0.5kb upstream 4704 true Scaffold7654: 20743-25446 Capsella grandiflora
Cagra.7654s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold7654: 24947-25446 Capsella grandiflora
Cagra.7654s0005 0.5kb downstream 0.5kb downstream 4704 true Scaffold7654: 20243-24946 Capsella grandiflora
Cagra.7654s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold7654: 20243-20742 Capsella grandiflora
Cagra.7654s0005 1.0kb upstream 1.0kb upstream 5204 true Scaffold7654: 20743-25946 Capsella grandiflora
Cagra.7654s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold7654: 24947-25946 Capsella grandiflora
Cagra.7654s0005 1.0kb downstream 1.0kb downstream 5204 true Scaffold7654: 19743-24946 Capsella grandiflora
Cagra.7654s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold7654: 19743-20742 Capsella grandiflora
Cagra.7654s0005 2.0kb upstream 2.0kb upstream 6204 true Scaffold7654: 20743-26946 Capsella grandiflora
Cagra.7654s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold7654: 24947-26946 Capsella grandiflora
Cagra.7654s0005 2.0kb downstream 2.0kb downstream 6204 true Scaffold7654: 18743-24946 Capsella grandiflora
Cagra.7654s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold7654: 18743-20742 Capsella grandiflora
Cagra.7654s0005 5.0kb upstream 5.0kb upstream 9204 true Scaffold7654: 20743-29946 Capsella grandiflora
Cagra.7654s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold7654: 24947-29946 Capsella grandiflora
Cagra.7654s0005 5.0kb downstream 5.0kb downstream 9204 true Scaffold7654: 15743-24946 Capsella grandiflora
Cagra.7654s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold7654: 15743-20742 Capsella grandiflora
Cagra.7654s0005 10.0kb upstream 10.0kb upstream 14204 true Scaffold7654: 20743-34946 Capsella grandiflora
Cagra.7654s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold7654: 24947-34946 Capsella grandiflora
Cagra.7654s0005 10.0kb downstream 10.0kb downstream 14204 true Scaffold7654: 10743-24946 Capsella grandiflora
Cagra.7654s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold7654: 10743-20742 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361854 5261 Brassicaceae View MSA
123827865 5264 Brassicales-Malvales View MSA
124345307 5266 SBM View MSA
124237897 5268 Malvidae View MSA
124068580 5270 Rosid View MSA
123738133 5271 Pentapetalae View MSA
122790534 5272 Eudicot View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain