Gene : Cagra.7526s0022 C. grandiflora v1.1
Defline:  (1 of 4) PTHR23023:SF37 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA2-RELATED Genomic Order:  22
Name:  ? Cagra.7526s0022 Secondary Identifier:  ? PAC:28911224
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWYDQC-4 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.7526s0022 0.5kb upstream 0.5kb upstream 2423 true Scaffold7526: 87369-89791 Capsella grandiflora
Cagra.7526s0022 0.5kb upstream 0.5kb upstream 500 false Scaffold7526: 87369-87868 Capsella grandiflora
Cagra.7526s0022 0.5kb downstream 0.5kb downstream 2423 true Scaffold7526: 87869-90291 Capsella grandiflora
Cagra.7526s0022 0.5kb downstream 0.5kb downstream 500 false Scaffold7526: 89792-90291 Capsella grandiflora
Cagra.7526s0022 1.0kb upstream 1.0kb upstream 2923 true Scaffold7526: 86869-89791 Capsella grandiflora
Cagra.7526s0022 1.0kb upstream 1.0kb upstream 1000 false Scaffold7526: 86869-87868 Capsella grandiflora
Cagra.7526s0022 1.0kb downstream 1.0kb downstream 2923 true Scaffold7526: 87869-90791 Capsella grandiflora
Cagra.7526s0022 1.0kb downstream 1.0kb downstream 1000 false Scaffold7526: 89792-90791 Capsella grandiflora
Cagra.7526s0022 2.0kb upstream 2.0kb upstream 3923 true Scaffold7526: 85869-89791 Capsella grandiflora
Cagra.7526s0022 2.0kb upstream 2.0kb upstream 2000 false Scaffold7526: 85869-87868 Capsella grandiflora
Cagra.7526s0022 2.0kb downstream 2.0kb downstream 3923 true Scaffold7526: 87869-91791 Capsella grandiflora
Cagra.7526s0022 2.0kb downstream 2.0kb downstream 2000 false Scaffold7526: 89792-91791 Capsella grandiflora
Cagra.7526s0022 5.0kb upstream 5.0kb upstream 6923 true Scaffold7526: 82869-89791 Capsella grandiflora
Cagra.7526s0022 5.0kb upstream 5.0kb upstream 5000 false Scaffold7526: 82869-87868 Capsella grandiflora
Cagra.7526s0022 5.0kb downstream 5.0kb downstream 6923 true Scaffold7526: 87869-94791 Capsella grandiflora
Cagra.7526s0022 5.0kb downstream 5.0kb downstream 5000 false Scaffold7526: 89792-94791 Capsella grandiflora
Cagra.7526s0022 10.0kb upstream 10.0kb upstream 11923 true Scaffold7526: 77869-89791 Capsella grandiflora
Cagra.7526s0022 10.0kb upstream 10.0kb upstream 10000 false Scaffold7526: 77869-87868 Capsella grandiflora
Cagra.7526s0022 10.0kb downstream 10.0kb downstream 11923 true Scaffold7526: 87869-99791 Capsella grandiflora
Cagra.7526s0022 10.0kb downstream 10.0kb downstream 10000 false Scaffold7526: 89792-99791 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372056 5261 Brassicaceae View MSA
123841606 5264 Brassicales-Malvales View MSA
124345129 5266 SBM View MSA
124252107 5268 Malvidae View MSA
124066807 5270 Rosid View MSA
123736759 5271 Pentapetalae View MSA
122792944 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain