Gene : Cagra.12428s0015 C. grandiflora v1.1
Defline:  (1 of 1) 4.1.3.36 - 1,4-dihydroxy-2-naphthoyl-CoA synthase / o-succinylbenzoyl-CoA 1,4-dihydroxy-2-naphthoate-lyase (cyclizing) Genomic Order:  15
Name:  ? Cagra.12428s0015 Secondary Identifier:  ? PAC:28910209
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5837 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12428s0015 0.5kb upstream 0.5kb upstream 3269 true Scaffold12428: 65995-69263 Capsella grandiflora
Cagra.12428s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold12428: 65995-66494 Capsella grandiflora
Cagra.12428s0015 0.5kb downstream 0.5kb downstream 3172 true Scaffold12428: 66495-69666 Capsella grandiflora
Cagra.12428s0015 0.5kb downstream 0.5kb downstream 403 false Scaffold12428: 69264-69666 Capsella grandiflora
Cagra.12428s0015 1.0kb upstream 1.0kb upstream 3769 true Scaffold12428: 65495-69263 Capsella grandiflora
Cagra.12428s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold12428: 65495-66494 Capsella grandiflora
Cagra.12428s0015 1.0kb downstream 1.0kb downstream 3172 true Scaffold12428: 66495-69666 Capsella grandiflora
Cagra.12428s0015 1.0kb downstream 1.0kb downstream 403 false Scaffold12428: 69264-69666 Capsella grandiflora
Cagra.12428s0015 2.0kb upstream 2.0kb upstream 4769 true Scaffold12428: 64495-69263 Capsella grandiflora
Cagra.12428s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold12428: 64495-66494 Capsella grandiflora
Cagra.12428s0015 2.0kb downstream 2.0kb downstream 3172 true Scaffold12428: 66495-69666 Capsella grandiflora
Cagra.12428s0015 2.0kb downstream 2.0kb downstream 403 false Scaffold12428: 69264-69666 Capsella grandiflora
Cagra.12428s0015 5.0kb upstream 5.0kb upstream 7769 true Scaffold12428: 61495-69263 Capsella grandiflora
Cagra.12428s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold12428: 61495-66494 Capsella grandiflora
Cagra.12428s0015 5.0kb downstream 5.0kb downstream 3172 true Scaffold12428: 66495-69666 Capsella grandiflora
Cagra.12428s0015 5.0kb downstream 5.0kb downstream 403 false Scaffold12428: 69264-69666 Capsella grandiflora
Cagra.12428s0015 10.0kb upstream 10.0kb upstream 12769 true Scaffold12428: 56495-69263 Capsella grandiflora
Cagra.12428s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold12428: 56495-66494 Capsella grandiflora
Cagra.12428s0015 10.0kb downstream 10.0kb downstream 3172 true Scaffold12428: 66495-69666 Capsella grandiflora
Cagra.12428s0015 10.0kb downstream 10.0kb downstream 403 false Scaffold12428: 69264-69666 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365259 5261 Brassicaceae View MSA
123830601 5264 Brassicales-Malvales View MSA
124337572 5266 SBM View MSA
124237230 5268 Malvidae View MSA
124066910 5270 Rosid View MSA
123738598 5271 Pentapetalae View MSA
122786230 5272 Eudicot View MSA
122043180 5273 Angiosperm View MSA
121346128 5274 Embryophyte View MSA
123423771 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain