Gene : Cagra.12271s0001 C. grandiflora v1.1
Defline:  (1 of 2) 4.1.1.20 - Diaminopimelate decarboxylase / Meso-2,6-diaminoheptanedioate carboxy-lyase Genomic Order:  1
Name:  ? Cagra.12271s0001 Secondary Identifier:  ? PAC:28915017
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5097 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12271s0001 0.5kb upstream 0.5kb upstream 1468 true Scaffold12271: 1-1468 Capsella grandiflora
Cagra.12271s0001 0.5kb upstream 0.5kb upstream 2 false Scaffold12271: 1-2 Capsella grandiflora
Cagra.12271s0001 0.5kb downstream 0.5kb downstream 1468 true Scaffold12271: 3-1470 Capsella grandiflora
Cagra.12271s0001 0.5kb downstream 0.5kb downstream 2 false Scaffold12271: 1469-1470 Capsella grandiflora
Cagra.12271s0001 1.0kb upstream 1.0kb upstream 1468 true Scaffold12271: 1-1468 Capsella grandiflora
Cagra.12271s0001 1.0kb upstream 1.0kb upstream 2 false Scaffold12271: 1-2 Capsella grandiflora
Cagra.12271s0001 1.0kb downstream 1.0kb downstream 1468 true Scaffold12271: 3-1470 Capsella grandiflora
Cagra.12271s0001 1.0kb downstream 1.0kb downstream 2 false Scaffold12271: 1469-1470 Capsella grandiflora
Cagra.12271s0001 2.0kb upstream 2.0kb upstream 1468 true Scaffold12271: 1-1468 Capsella grandiflora
Cagra.12271s0001 2.0kb upstream 2.0kb upstream 2 false Scaffold12271: 1-2 Capsella grandiflora
Cagra.12271s0001 2.0kb downstream 2.0kb downstream 1468 true Scaffold12271: 3-1470 Capsella grandiflora
Cagra.12271s0001 2.0kb downstream 2.0kb downstream 2 false Scaffold12271: 1469-1470 Capsella grandiflora
Cagra.12271s0001 5.0kb upstream 5.0kb upstream 1468 true Scaffold12271: 1-1468 Capsella grandiflora
Cagra.12271s0001 5.0kb upstream 5.0kb upstream 2 false Scaffold12271: 1-2 Capsella grandiflora
Cagra.12271s0001 5.0kb downstream 5.0kb downstream 1468 true Scaffold12271: 3-1470 Capsella grandiflora
Cagra.12271s0001 5.0kb downstream 5.0kb downstream 2 false Scaffold12271: 1469-1470 Capsella grandiflora
Cagra.12271s0001 10.0kb upstream 10.0kb upstream 1468 true Scaffold12271: 1-1468 Capsella grandiflora
Cagra.12271s0001 10.0kb upstream 10.0kb upstream 2 false Scaffold12271: 1-2 Capsella grandiflora
Cagra.12271s0001 10.0kb downstream 10.0kb downstream 1468 true Scaffold12271: 3-1470 Capsella grandiflora
Cagra.12271s0001 10.0kb downstream 10.0kb downstream 2 false Scaffold12271: 1469-1470 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379676 5261 Brassicaceae View MSA
123802375 5264 Brassicales-Malvales View MSA
124299573 5266 SBM View MSA
124250091 5268 Malvidae View MSA
124070276 5270 Rosid View MSA
123742733 5271 Pentapetalae View MSA
122796086 5272 Eudicot View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain