Gene : Cagra.11649s0001 C. grandiflora v1.1
Defline:  (1 of 19) KOG0417 - Ubiquitin-protein ligase Genomic Order:  1
Name:  ? Cagra.11649s0001 Secondary Identifier:  ? PAC:28918798
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.11649s0001 0.5kb upstream 0.5kb upstream 1113 true Scaffold11649: 1084-2196 Capsella grandiflora
Cagra.11649s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold11649: 1697-2196 Capsella grandiflora
Cagra.11649s0001 0.5kb downstream 0.5kb downstream 1113 true Scaffold11649: 584-1696 Capsella grandiflora
Cagra.11649s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold11649: 584-1083 Capsella grandiflora
Cagra.11649s0001 1.0kb upstream 1.0kb upstream 1613 true Scaffold11649: 1084-2696 Capsella grandiflora
Cagra.11649s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold11649: 1697-2696 Capsella grandiflora
Cagra.11649s0001 1.0kb downstream 1.0kb downstream 1613 true Scaffold11649: 84-1696 Capsella grandiflora
Cagra.11649s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold11649: 84-1083 Capsella grandiflora
Cagra.11649s0001 2.0kb upstream 2.0kb upstream 2613 true Scaffold11649: 1084-3696 Capsella grandiflora
Cagra.11649s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold11649: 1697-3696 Capsella grandiflora
Cagra.11649s0001 2.0kb downstream 2.0kb downstream 1696 true Scaffold11649: 1-1696 Capsella grandiflora
Cagra.11649s0001 2.0kb downstream 2.0kb downstream 1083 false Scaffold11649: 1-1083 Capsella grandiflora
Cagra.11649s0001 5.0kb upstream 5.0kb upstream 5613 true Scaffold11649: 1084-6696 Capsella grandiflora
Cagra.11649s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold11649: 1697-6696 Capsella grandiflora
Cagra.11649s0001 5.0kb downstream 5.0kb downstream 1696 true Scaffold11649: 1-1696 Capsella grandiflora
Cagra.11649s0001 5.0kb downstream 5.0kb downstream 1083 false Scaffold11649: 1-1083 Capsella grandiflora
Cagra.11649s0001 10.0kb upstream 10.0kb upstream 10613 true Scaffold11649: 1084-11696 Capsella grandiflora
Cagra.11649s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold11649: 1697-11696 Capsella grandiflora
Cagra.11649s0001 10.0kb downstream 10.0kb downstream 1696 true Scaffold11649: 1-1696 Capsella grandiflora
Cagra.11649s0001 10.0kb downstream 10.0kb downstream 1083 false Scaffold11649: 1-1083 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361845 5261 Brassicaceae View MSA
123798259 5264 Brassicales-Malvales View MSA
124295926 5266 SBM View MSA
124254787 5268 Malvidae View MSA
124074953 5270 Rosid View MSA
123751143 5271 Pentapetalae View MSA
122796795 5272 Eudicot View MSA
122049643 5273 Angiosperm View MSA
121351650 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain