Gene : Cagra.11903s0001 C. grandiflora v1.1
Defline:  (1 of 13) PF13963 - Transposase-associated domain (Transpos_assoc) Genomic Order:  1
Name:  ? Cagra.11903s0001 Secondary Identifier:  ? PAC:28903284
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.11903s0001 0.5kb upstream 0.5kb upstream 961 true Scaffold11903: 1598-2558 Capsella grandiflora
Cagra.11903s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold11903: 2059-2558 Capsella grandiflora
Cagra.11903s0001 0.5kb downstream 0.5kb downstream 961 true Scaffold11903: 1098-2058 Capsella grandiflora
Cagra.11903s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold11903: 1098-1597 Capsella grandiflora
Cagra.11903s0001 1.0kb upstream 1.0kb upstream 1461 true Scaffold11903: 1598-3058 Capsella grandiflora
Cagra.11903s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold11903: 2059-3058 Capsella grandiflora
Cagra.11903s0001 1.0kb downstream 1.0kb downstream 1461 true Scaffold11903: 598-2058 Capsella grandiflora
Cagra.11903s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold11903: 598-1597 Capsella grandiflora
Cagra.11903s0001 2.0kb upstream 2.0kb upstream 2461 true Scaffold11903: 1598-4058 Capsella grandiflora
Cagra.11903s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold11903: 2059-4058 Capsella grandiflora
Cagra.11903s0001 2.0kb downstream 2.0kb downstream 2058 true Scaffold11903: 1-2058 Capsella grandiflora
Cagra.11903s0001 2.0kb downstream 2.0kb downstream 1597 false Scaffold11903: 1-1597 Capsella grandiflora
Cagra.11903s0001 5.0kb upstream 5.0kb upstream 5461 true Scaffold11903: 1598-7058 Capsella grandiflora
Cagra.11903s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold11903: 2059-7058 Capsella grandiflora
Cagra.11903s0001 5.0kb downstream 5.0kb downstream 2058 true Scaffold11903: 1-2058 Capsella grandiflora
Cagra.11903s0001 5.0kb downstream 5.0kb downstream 1597 false Scaffold11903: 1-1597 Capsella grandiflora
Cagra.11903s0001 10.0kb upstream 10.0kb upstream 7143 true Scaffold11903: 1598-8740 Capsella grandiflora
Cagra.11903s0001 10.0kb upstream 10.0kb upstream 6682 false Scaffold11903: 2059-8740 Capsella grandiflora
Cagra.11903s0001 10.0kb downstream 10.0kb downstream 2058 true Scaffold11903: 1-2058 Capsella grandiflora
Cagra.11903s0001 10.0kb downstream 10.0kb downstream 1597 false Scaffold11903: 1-1597 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332390 5261 Brassicaceae Singleton cluster - no MSA
123773465 5264 Brassicales-Malvales Singleton cluster - no MSA
124271948 5266 SBM Singleton cluster - no MSA
124127873 5268 Malvidae Singleton cluster - no MSA
124039032 5270 Rosid View MSA
123752947 5271 Pentapetalae View MSA
122774877 5272 Eudicot View MSA
122050110 5273 Angiosperm View MSA
121351710 5274 Embryophyte View MSA
123427809 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain