Gene : Cagra.12076s0004 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10969:SF39 - AUTOPHAGY-RELATED PROTEIN 8F Genomic Order:  4
Name:  ? Cagra.12076s0004 Secondary Identifier:  ? PAC:28907610
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.12076s0004 0.5kb upstream 0.5kb upstream 2280 true Scaffold12076: 6722-9001 Capsella grandiflora
Cagra.12076s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold12076: 6722-7221 Capsella grandiflora
Cagra.12076s0004 0.5kb downstream 0.5kb downstream 2280 true Scaffold12076: 7222-9501 Capsella grandiflora
Cagra.12076s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold12076: 9002-9501 Capsella grandiflora
Cagra.12076s0004 1.0kb upstream 1.0kb upstream 2780 true Scaffold12076: 6222-9001 Capsella grandiflora
Cagra.12076s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold12076: 6222-7221 Capsella grandiflora
Cagra.12076s0004 1.0kb downstream 1.0kb downstream 2780 true Scaffold12076: 7222-10001 Capsella grandiflora
Cagra.12076s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold12076: 9002-10001 Capsella grandiflora
Cagra.12076s0004 2.0kb upstream 2.0kb upstream 3780 true Scaffold12076: 5222-9001 Capsella grandiflora
Cagra.12076s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold12076: 5222-7221 Capsella grandiflora
Cagra.12076s0004 2.0kb downstream 2.0kb downstream 3780 true Scaffold12076: 7222-11001 Capsella grandiflora
Cagra.12076s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold12076: 9002-11001 Capsella grandiflora
Cagra.12076s0004 5.0kb upstream 5.0kb upstream 6780 true Scaffold12076: 2222-9001 Capsella grandiflora
Cagra.12076s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold12076: 2222-7221 Capsella grandiflora
Cagra.12076s0004 5.0kb downstream 5.0kb downstream 6780 true Scaffold12076: 7222-14001 Capsella grandiflora
Cagra.12076s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold12076: 9002-14001 Capsella grandiflora
Cagra.12076s0004 10.0kb upstream 10.0kb upstream 9001 true Scaffold12076: 1-9001 Capsella grandiflora
Cagra.12076s0004 10.0kb upstream 10.0kb upstream 7221 false Scaffold12076: 1-7221 Capsella grandiflora
Cagra.12076s0004 10.0kb downstream 10.0kb downstream 11780 true Scaffold12076: 7222-19001 Capsella grandiflora
Cagra.12076s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold12076: 9002-19001 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366157 5261 Brassicaceae View MSA
123828582 5264 Brassicales-Malvales View MSA
124343104 5266 SBM View MSA
124243893 5268 Malvidae View MSA
124068042 5270 Rosid View MSA
123752408 5271 Pentapetalae View MSA
122791477 5272 Eudicot View MSA
122048918 5273 Angiosperm View MSA
121349541 5274 Embryophyte View MSA
123427174 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain