Gene : Cagra.10869s0004 C. grandiflora v1.1
Defline:  (1 of 1) 4.1.3.4 - Hydroxymethylglutaryl-CoA lyase / HMG-CoA lyase Genomic Order:  4
Name:  ? Cagra.10869s0004 Secondary Identifier:  ? PAC:28902526
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LEU-DEG2-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.10869s0004 0.5kb upstream 0.5kb upstream 3743 true Scaffold10869: 42014-45756 Capsella grandiflora
Cagra.10869s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold10869: 42014-42513 Capsella grandiflora
Cagra.10869s0004 0.5kb downstream 0.5kb downstream 3743 true Scaffold10869: 42514-46256 Capsella grandiflora
Cagra.10869s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold10869: 45757-46256 Capsella grandiflora
Cagra.10869s0004 1.0kb upstream 1.0kb upstream 4243 true Scaffold10869: 41514-45756 Capsella grandiflora
Cagra.10869s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold10869: 41514-42513 Capsella grandiflora
Cagra.10869s0004 1.0kb downstream 1.0kb downstream 4243 true Scaffold10869: 42514-46756 Capsella grandiflora
Cagra.10869s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold10869: 45757-46756 Capsella grandiflora
Cagra.10869s0004 2.0kb upstream 2.0kb upstream 5243 true Scaffold10869: 40514-45756 Capsella grandiflora
Cagra.10869s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold10869: 40514-42513 Capsella grandiflora
Cagra.10869s0004 2.0kb downstream 2.0kb downstream 5243 true Scaffold10869: 42514-47756 Capsella grandiflora
Cagra.10869s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold10869: 45757-47756 Capsella grandiflora
Cagra.10869s0004 5.0kb upstream 5.0kb upstream 8243 true Scaffold10869: 37514-45756 Capsella grandiflora
Cagra.10869s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold10869: 37514-42513 Capsella grandiflora
Cagra.10869s0004 5.0kb downstream 5.0kb downstream 7937 true Scaffold10869: 42514-50450 Capsella grandiflora
Cagra.10869s0004 5.0kb downstream 5.0kb downstream 4694 false Scaffold10869: 45757-50450 Capsella grandiflora
Cagra.10869s0004 10.0kb upstream 10.0kb upstream 13243 true Scaffold10869: 32514-45756 Capsella grandiflora
Cagra.10869s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold10869: 32514-42513 Capsella grandiflora
Cagra.10869s0004 10.0kb downstream 10.0kb downstream 7937 true Scaffold10869: 42514-50450 Capsella grandiflora
Cagra.10869s0004 10.0kb downstream 10.0kb downstream 4694 false Scaffold10869: 45757-50450 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364667 5261 Brassicaceae View MSA
123834510 5264 Brassicales-Malvales View MSA
124345181 5266 SBM View MSA
124245610 5268 Malvidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain