Gene : Cagra.11216s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR24031:SF145 - CRISPR-ASSOCIATED ENDONUCLEASE/HELICASE CAS3 Genomic Order:  6
Name:  ? Cagra.11216s0006 Secondary Identifier:  ? PAC:28917941
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.11216s0006 0.5kb upstream 0.5kb upstream 6699 true Scaffold11216: 25204-31902 Capsella grandiflora
Cagra.11216s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold11216: 25204-25703 Capsella grandiflora
Cagra.11216s0006 0.5kb downstream 0.5kb downstream 6699 true Scaffold11216: 25704-32402 Capsella grandiflora
Cagra.11216s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold11216: 31903-32402 Capsella grandiflora
Cagra.11216s0006 1.0kb upstream 1.0kb upstream 7199 true Scaffold11216: 24704-31902 Capsella grandiflora
Cagra.11216s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold11216: 24704-25703 Capsella grandiflora
Cagra.11216s0006 1.0kb downstream 1.0kb downstream 7199 true Scaffold11216: 25704-32902 Capsella grandiflora
Cagra.11216s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold11216: 31903-32902 Capsella grandiflora
Cagra.11216s0006 2.0kb upstream 2.0kb upstream 8199 true Scaffold11216: 23704-31902 Capsella grandiflora
Cagra.11216s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold11216: 23704-25703 Capsella grandiflora
Cagra.11216s0006 2.0kb downstream 2.0kb downstream 8199 true Scaffold11216: 25704-33902 Capsella grandiflora
Cagra.11216s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold11216: 31903-33902 Capsella grandiflora
Cagra.11216s0006 5.0kb upstream 5.0kb upstream 11199 true Scaffold11216: 20704-31902 Capsella grandiflora
Cagra.11216s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold11216: 20704-25703 Capsella grandiflora
Cagra.11216s0006 5.0kb downstream 5.0kb downstream 11199 true Scaffold11216: 25704-36902 Capsella grandiflora
Cagra.11216s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold11216: 31903-36902 Capsella grandiflora
Cagra.11216s0006 10.0kb upstream 10.0kb upstream 16199 true Scaffold11216: 15704-31902 Capsella grandiflora
Cagra.11216s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold11216: 15704-25703 Capsella grandiflora
Cagra.11216s0006 10.0kb downstream 10.0kb downstream 16199 true Scaffold11216: 25704-41902 Capsella grandiflora
Cagra.11216s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold11216: 31903-41902 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363166 5261 Brassicaceae View MSA
123829545 5264 Brassicales-Malvales View MSA
124340838 5266 SBM View MSA
124244699 5268 Malvidae View MSA
124066132 5270 Rosid View MSA
123737011 5271 Pentapetalae View MSA
122788541 5272 Eudicot View MSA
122045198 5273 Angiosperm View MSA
121347871 5274 Embryophyte View MSA
123426910 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain