Gene : Cagra.16111s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11062:SF105 - BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED Genomic Order:  2
Name:  ? Cagra.16111s0002 Secondary Identifier:  ? PAC:28916947
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5980 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.16111s0002 0.5kb upstream 0.5kb upstream 2581 true Scaffold16111: 714-3294 Capsella grandiflora
Cagra.16111s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold16111: 2795-3294 Capsella grandiflora
Cagra.16111s0002 0.5kb downstream 0.5kb downstream 2581 true Scaffold16111: 214-2794 Capsella grandiflora
Cagra.16111s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold16111: 214-713 Capsella grandiflora
Cagra.16111s0002 1.0kb upstream 1.0kb upstream 3081 true Scaffold16111: 714-3794 Capsella grandiflora
Cagra.16111s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold16111: 2795-3794 Capsella grandiflora
Cagra.16111s0002 1.0kb downstream 1.0kb downstream 2794 true Scaffold16111: 1-2794 Capsella grandiflora
Cagra.16111s0002 1.0kb downstream 1.0kb downstream 713 false Scaffold16111: 1-713 Capsella grandiflora
Cagra.16111s0002 2.0kb upstream 2.0kb upstream 4081 true Scaffold16111: 714-4794 Capsella grandiflora
Cagra.16111s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold16111: 2795-4794 Capsella grandiflora
Cagra.16111s0002 2.0kb downstream 2.0kb downstream 2794 true Scaffold16111: 1-2794 Capsella grandiflora
Cagra.16111s0002 2.0kb downstream 2.0kb downstream 713 false Scaffold16111: 1-713 Capsella grandiflora
Cagra.16111s0002 5.0kb upstream 5.0kb upstream 7081 true Scaffold16111: 714-7794 Capsella grandiflora
Cagra.16111s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold16111: 2795-7794 Capsella grandiflora
Cagra.16111s0002 5.0kb downstream 5.0kb downstream 2794 true Scaffold16111: 1-2794 Capsella grandiflora
Cagra.16111s0002 5.0kb downstream 5.0kb downstream 713 false Scaffold16111: 1-713 Capsella grandiflora
Cagra.16111s0002 10.0kb upstream 10.0kb upstream 12081 true Scaffold16111: 714-12794 Capsella grandiflora
Cagra.16111s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold16111: 2795-12794 Capsella grandiflora
Cagra.16111s0002 10.0kb downstream 10.0kb downstream 2794 true Scaffold16111: 1-2794 Capsella grandiflora
Cagra.16111s0002 10.0kb downstream 10.0kb downstream 713 false Scaffold16111: 1-713 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377800 5261 Brassicaceae View MSA
123828573 5264 Brassicales-Malvales View MSA
124337730 5266 SBM View MSA
124244464 5268 Malvidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain