Gene : Cagra.16070s0004 C. grandiflora v1.1
Defline:  (1 of 2) 2.5.1.81 - Geranylfarnesyl diphosphate synthase / FGPP synthase Genomic Order:  4
Name:  ? Cagra.16070s0004 Secondary Identifier:  ? PAC:28904684
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HEXPPSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5120 Capsella grandiflora pathologic  
Cgrandiflora PWY-5783 Capsella grandiflora pathologic  
Cgrandiflora PWY-5805 Capsella grandiflora pathologic  
Cgrandiflora PWY-5807 Capsella grandiflora pathologic  
Cgrandiflora PWY-5864 Capsella grandiflora pathologic  
Cgrandiflora PWY-5910 Capsella grandiflora pathologic  
Cgrandiflora PWY-6520 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.16070s0004 0.5kb upstream 0.5kb upstream 2767 true Scaffold16070: 7194-9960 Capsella grandiflora
Cagra.16070s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold16070: 7194-7693 Capsella grandiflora
Cagra.16070s0004 0.5kb downstream 0.5kb downstream 2767 true Scaffold16070: 7694-10460 Capsella grandiflora
Cagra.16070s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold16070: 9961-10460 Capsella grandiflora
Cagra.16070s0004 1.0kb upstream 1.0kb upstream 3267 true Scaffold16070: 6694-9960 Capsella grandiflora
Cagra.16070s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold16070: 6694-7693 Capsella grandiflora
Cagra.16070s0004 1.0kb downstream 1.0kb downstream 3267 true Scaffold16070: 7694-10960 Capsella grandiflora
Cagra.16070s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold16070: 9961-10960 Capsella grandiflora
Cagra.16070s0004 2.0kb upstream 2.0kb upstream 4267 true Scaffold16070: 5694-9960 Capsella grandiflora
Cagra.16070s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold16070: 5694-7693 Capsella grandiflora
Cagra.16070s0004 2.0kb downstream 2.0kb downstream 4267 true Scaffold16070: 7694-11960 Capsella grandiflora
Cagra.16070s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold16070: 9961-11960 Capsella grandiflora
Cagra.16070s0004 5.0kb upstream 5.0kb upstream 7267 true Scaffold16070: 2694-9960 Capsella grandiflora
Cagra.16070s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold16070: 2694-7693 Capsella grandiflora
Cagra.16070s0004 5.0kb downstream 5.0kb downstream 5153 true Scaffold16070: 7694-12846 Capsella grandiflora
Cagra.16070s0004 5.0kb downstream 5.0kb downstream 2886 false Scaffold16070: 9961-12846 Capsella grandiflora
Cagra.16070s0004 10.0kb upstream 10.0kb upstream 9960 true Scaffold16070: 1-9960 Capsella grandiflora
Cagra.16070s0004 10.0kb upstream 10.0kb upstream 7693 false Scaffold16070: 1-7693 Capsella grandiflora
Cagra.16070s0004 10.0kb downstream 10.0kb downstream 5153 true Scaffold16070: 7694-12846 Capsella grandiflora
Cagra.16070s0004 10.0kb downstream 10.0kb downstream 2886 false Scaffold16070: 9961-12846 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
122373293 5261 Brassicaceae View MSA
123836843 5264 Brassicales-Malvales View MSA
124340662 5266 SBM View MSA
124241252 5268 Malvidae View MSA
124065347 5270 Rosid View MSA
123746184 5271 Pentapetalae View MSA
122791358 5272 Eudicot View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain