Gene : Cagra.15036s0033 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  33
Name:  ? Cagra.15036s0033 Secondary Identifier:  ? PAC:28909108
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.15036s0033 0.5kb upstream 0.5kb upstream 3146 true Scaffold15036: 124768-127913 Capsella grandiflora
Cagra.15036s0033 0.5kb upstream 0.5kb upstream 500 false Scaffold15036: 127414-127913 Capsella grandiflora
Cagra.15036s0033 0.5kb downstream 0.5kb downstream 3146 true Scaffold15036: 124268-127413 Capsella grandiflora
Cagra.15036s0033 0.5kb downstream 0.5kb downstream 500 false Scaffold15036: 124268-124767 Capsella grandiflora
Cagra.15036s0033 1.0kb upstream 1.0kb upstream 3646 true Scaffold15036: 124768-128413 Capsella grandiflora
Cagra.15036s0033 1.0kb upstream 1.0kb upstream 1000 false Scaffold15036: 127414-128413 Capsella grandiflora
Cagra.15036s0033 1.0kb downstream 1.0kb downstream 3646 true Scaffold15036: 123768-127413 Capsella grandiflora
Cagra.15036s0033 1.0kb downstream 1.0kb downstream 1000 false Scaffold15036: 123768-124767 Capsella grandiflora
Cagra.15036s0033 2.0kb upstream 2.0kb upstream 4646 true Scaffold15036: 124768-129413 Capsella grandiflora
Cagra.15036s0033 2.0kb upstream 2.0kb upstream 2000 false Scaffold15036: 127414-129413 Capsella grandiflora
Cagra.15036s0033 2.0kb downstream 2.0kb downstream 4646 true Scaffold15036: 122768-127413 Capsella grandiflora
Cagra.15036s0033 2.0kb downstream 2.0kb downstream 2000 false Scaffold15036: 122768-124767 Capsella grandiflora
Cagra.15036s0033 5.0kb upstream 5.0kb upstream 7646 true Scaffold15036: 124768-132413 Capsella grandiflora
Cagra.15036s0033 5.0kb upstream 5.0kb upstream 5000 false Scaffold15036: 127414-132413 Capsella grandiflora
Cagra.15036s0033 5.0kb downstream 5.0kb downstream 7646 true Scaffold15036: 119768-127413 Capsella grandiflora
Cagra.15036s0033 5.0kb downstream 5.0kb downstream 5000 false Scaffold15036: 119768-124767 Capsella grandiflora
Cagra.15036s0033 10.0kb upstream 10.0kb upstream 12646 true Scaffold15036: 124768-137413 Capsella grandiflora
Cagra.15036s0033 10.0kb upstream 10.0kb upstream 10000 false Scaffold15036: 127414-137413 Capsella grandiflora
Cagra.15036s0033 10.0kb downstream 10.0kb downstream 12646 true Scaffold15036: 114768-127413 Capsella grandiflora
Cagra.15036s0033 10.0kb downstream 10.0kb downstream 10000 false Scaffold15036: 114768-124767 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370418 5261 Brassicaceae View MSA
123839498 5264 Brassicales-Malvales View MSA
124342145 5266 SBM View MSA
124241872 5268 Malvidae View MSA
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain