Gene : Cagra.13923s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31642:SF40 - DUAL TRANSCRIPTION UNIT AND ALTERNATIVE SPLICING PROTEIN GLAUCE Genomic Order:  7
Name:  ? Cagra.13923s0007 Secondary Identifier:  ? PAC:28901725
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7120 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.13923s0007 0.5kb upstream 0.5kb upstream 3575 true Scaffold13923: 46892-50466 Capsella grandiflora
Cagra.13923s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold13923: 46892-47391 Capsella grandiflora
Cagra.13923s0007 0.5kb downstream 0.5kb downstream 3575 true Scaffold13923: 47392-50966 Capsella grandiflora
Cagra.13923s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold13923: 50467-50966 Capsella grandiflora
Cagra.13923s0007 1.0kb upstream 1.0kb upstream 4075 true Scaffold13923: 46392-50466 Capsella grandiflora
Cagra.13923s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold13923: 46392-47391 Capsella grandiflora
Cagra.13923s0007 1.0kb downstream 1.0kb downstream 4075 true Scaffold13923: 47392-51466 Capsella grandiflora
Cagra.13923s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold13923: 50467-51466 Capsella grandiflora
Cagra.13923s0007 2.0kb upstream 2.0kb upstream 5075 true Scaffold13923: 45392-50466 Capsella grandiflora
Cagra.13923s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold13923: 45392-47391 Capsella grandiflora
Cagra.13923s0007 2.0kb downstream 2.0kb downstream 5075 true Scaffold13923: 47392-52466 Capsella grandiflora
Cagra.13923s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold13923: 50467-52466 Capsella grandiflora
Cagra.13923s0007 5.0kb upstream 5.0kb upstream 8075 true Scaffold13923: 42392-50466 Capsella grandiflora
Cagra.13923s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold13923: 42392-47391 Capsella grandiflora
Cagra.13923s0007 5.0kb downstream 5.0kb downstream 8075 true Scaffold13923: 47392-55466 Capsella grandiflora
Cagra.13923s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold13923: 50467-55466 Capsella grandiflora
Cagra.13923s0007 10.0kb upstream 10.0kb upstream 13075 true Scaffold13923: 37392-50466 Capsella grandiflora
Cagra.13923s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold13923: 37392-47391 Capsella grandiflora
Cagra.13923s0007 10.0kb downstream 10.0kb downstream 12788 true Scaffold13923: 47392-60179 Capsella grandiflora
Cagra.13923s0007 10.0kb downstream 10.0kb downstream 9713 false Scaffold13923: 50467-60179 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369907 5261 Brassicaceae View MSA
123827879 5264 Brassicales-Malvales View MSA
124345687 5266 SBM View MSA
124243245 5268 Malvidae View MSA
124063642 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain