Gene : Cagra.13370s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11680//PTHR11680:SF11 - SERINE HYDROXYMETHYLTRANSFERASE Genomic Order:  1
Name:  ? Cagra.13370s0001 Secondary Identifier:  ? PAC:28918140
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-2161 Capsella grandiflora pathologic  
Cgrandiflora PWY-3841 Capsella grandiflora pathologic  
Cgrandiflora SER-GLYSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.13370s0001 0.5kb upstream 0.5kb upstream 2870 true Scaffold13370: 259-3128 Capsella grandiflora
Cagra.13370s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold13370: 2629-3128 Capsella grandiflora
Cagra.13370s0001 0.5kb downstream 0.5kb downstream 2628 true Scaffold13370: 1-2628 Capsella grandiflora
Cagra.13370s0001 0.5kb downstream 0.5kb downstream 258 false Scaffold13370: 1-258 Capsella grandiflora
Cagra.13370s0001 1.0kb upstream 1.0kb upstream 3370 true Scaffold13370: 259-3628 Capsella grandiflora
Cagra.13370s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold13370: 2629-3628 Capsella grandiflora
Cagra.13370s0001 1.0kb downstream 1.0kb downstream 2628 true Scaffold13370: 1-2628 Capsella grandiflora
Cagra.13370s0001 1.0kb downstream 1.0kb downstream 258 false Scaffold13370: 1-258 Capsella grandiflora
Cagra.13370s0001 2.0kb upstream 2.0kb upstream 4370 true Scaffold13370: 259-4628 Capsella grandiflora
Cagra.13370s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold13370: 2629-4628 Capsella grandiflora
Cagra.13370s0001 2.0kb downstream 2.0kb downstream 2628 true Scaffold13370: 1-2628 Capsella grandiflora
Cagra.13370s0001 2.0kb downstream 2.0kb downstream 258 false Scaffold13370: 1-258 Capsella grandiflora
Cagra.13370s0001 5.0kb upstream 5.0kb upstream 7370 true Scaffold13370: 259-7628 Capsella grandiflora
Cagra.13370s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold13370: 2629-7628 Capsella grandiflora
Cagra.13370s0001 5.0kb downstream 5.0kb downstream 2628 true Scaffold13370: 1-2628 Capsella grandiflora
Cagra.13370s0001 5.0kb downstream 5.0kb downstream 258 false Scaffold13370: 1-258 Capsella grandiflora
Cagra.13370s0001 10.0kb upstream 10.0kb upstream 9308 true Scaffold13370: 259-9566 Capsella grandiflora
Cagra.13370s0001 10.0kb upstream 10.0kb upstream 6938 false Scaffold13370: 2629-9566 Capsella grandiflora
Cagra.13370s0001 10.0kb downstream 10.0kb downstream 2628 true Scaffold13370: 1-2628 Capsella grandiflora
Cagra.13370s0001 10.0kb downstream 10.0kb downstream 258 false Scaffold13370: 1-258 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381191 5261 Brassicaceae View MSA
123836002 5264 Brassicales-Malvales View MSA
124338448 5266 SBM View MSA
124241097 5268 Malvidae View MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain