Gene : Cagra.1211s0015 C. grandiflora v1.1
Defline:  (1 of 6) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  15
Name:  ? Cagra.1211s0015 Secondary Identifier:  ? PAC:28915412
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1211s0015 0.5kb upstream 0.5kb upstream 2165 true Scaffold1211: 71856-74020 Capsella grandiflora
Cagra.1211s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold1211: 71856-72355 Capsella grandiflora
Cagra.1211s0015 0.5kb downstream 0.5kb downstream 2165 true Scaffold1211: 72356-74520 Capsella grandiflora
Cagra.1211s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold1211: 74021-74520 Capsella grandiflora
Cagra.1211s0015 1.0kb upstream 1.0kb upstream 2665 true Scaffold1211: 71356-74020 Capsella grandiflora
Cagra.1211s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold1211: 71356-72355 Capsella grandiflora
Cagra.1211s0015 1.0kb downstream 1.0kb downstream 2665 true Scaffold1211: 72356-75020 Capsella grandiflora
Cagra.1211s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold1211: 74021-75020 Capsella grandiflora
Cagra.1211s0015 2.0kb upstream 2.0kb upstream 3665 true Scaffold1211: 70356-74020 Capsella grandiflora
Cagra.1211s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold1211: 70356-72355 Capsella grandiflora
Cagra.1211s0015 2.0kb downstream 2.0kb downstream 3665 true Scaffold1211: 72356-76020 Capsella grandiflora
Cagra.1211s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold1211: 74021-76020 Capsella grandiflora
Cagra.1211s0015 5.0kb upstream 5.0kb upstream 6665 true Scaffold1211: 67356-74020 Capsella grandiflora
Cagra.1211s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold1211: 67356-72355 Capsella grandiflora
Cagra.1211s0015 5.0kb downstream 5.0kb downstream 6665 true Scaffold1211: 72356-79020 Capsella grandiflora
Cagra.1211s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold1211: 74021-79020 Capsella grandiflora
Cagra.1211s0015 10.0kb upstream 10.0kb upstream 11665 true Scaffold1211: 62356-74020 Capsella grandiflora
Cagra.1211s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold1211: 62356-72355 Capsella grandiflora
Cagra.1211s0015 10.0kb downstream 10.0kb downstream 11665 true Scaffold1211: 72356-84020 Capsella grandiflora
Cagra.1211s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold1211: 74021-84020 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379153 5261 Brassicaceae View MSA
123802114 5264 Brassicales-Malvales View MSA
124299332 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain