Gene : Cagra.15017s0002 C. grandiflora v1.1

Defline:  (1 of 43) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2
Name:  ? Cagra.15017s0002 Secondary Identifier:  ? PAC:28898089

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.15017s0002 0.5kb upstream 0.5kb upstream 2437 true Scaffold15017: 6323-8759 Capsella grandiflora
Cagra.15017s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold15017: 6323-6822 Capsella grandiflora
Cagra.15017s0002 0.5kb downstream 0.5kb downstream 2437 true Scaffold15017: 6823-9259 Capsella grandiflora
Cagra.15017s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold15017: 8760-9259 Capsella grandiflora
Cagra.15017s0002 1.0kb upstream 1.0kb upstream 2937 true Scaffold15017: 5823-8759 Capsella grandiflora
Cagra.15017s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold15017: 5823-6822 Capsella grandiflora
Cagra.15017s0002 1.0kb downstream 1.0kb downstream 2937 true Scaffold15017: 6823-9759 Capsella grandiflora
Cagra.15017s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold15017: 8760-9759 Capsella grandiflora
Cagra.15017s0002 2.0kb upstream 2.0kb upstream 3937 true Scaffold15017: 4823-8759 Capsella grandiflora
Cagra.15017s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold15017: 4823-6822 Capsella grandiflora
Cagra.15017s0002 2.0kb downstream 2.0kb downstream 3937 true Scaffold15017: 6823-10759 Capsella grandiflora
Cagra.15017s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold15017: 8760-10759 Capsella grandiflora
Cagra.15017s0002 5.0kb upstream 5.0kb upstream 6937 true Scaffold15017: 1823-8759 Capsella grandiflora
Cagra.15017s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold15017: 1823-6822 Capsella grandiflora
Cagra.15017s0002 5.0kb downstream 5.0kb downstream 6937 true Scaffold15017: 6823-13759 Capsella grandiflora
Cagra.15017s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold15017: 8760-13759 Capsella grandiflora
Cagra.15017s0002 10.0kb upstream 10.0kb upstream 8759 true Scaffold15017: 1-8759 Capsella grandiflora
Cagra.15017s0002 10.0kb upstream 10.0kb upstream 6822 false Scaffold15017: 1-6822 Capsella grandiflora
Cagra.15017s0002 10.0kb downstream 10.0kb downstream 11937 true Scaffold15017: 6823-18759 Capsella grandiflora
Cagra.15017s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold15017: 8760-18759 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332627 5261 Brassicaceae Singleton cluster - no MSA
123773678 5264 Brassicales-Malvales Singleton cluster - no MSA
124349736 5266 SBM View MSA
124254642 5268 Malvidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain