Gene : Cagra.0016s0005 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11945:SF174 - PROTEIN AGAMOUS-LIKE 48-RELATED Genomic Order:  5
Name:  ? Cagra.0016s0005 Secondary Identifier:  ? PAC:28899565
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0016s0005 0.5kb upstream 0.5kb upstream 1508 true Scaffold16: 15645-17152 Capsella grandiflora
Cagra.0016s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold16: 15645-16144 Capsella grandiflora
Cagra.0016s0005 0.5kb downstream 0.5kb downstream 1508 true Scaffold16: 16145-17652 Capsella grandiflora
Cagra.0016s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold16: 17153-17652 Capsella grandiflora
Cagra.0016s0005 1.0kb upstream 1.0kb upstream 2008 true Scaffold16: 15145-17152 Capsella grandiflora
Cagra.0016s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold16: 15145-16144 Capsella grandiflora
Cagra.0016s0005 1.0kb downstream 1.0kb downstream 2008 true Scaffold16: 16145-18152 Capsella grandiflora
Cagra.0016s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold16: 17153-18152 Capsella grandiflora
Cagra.0016s0005 2.0kb upstream 2.0kb upstream 3008 true Scaffold16: 14145-17152 Capsella grandiflora
Cagra.0016s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold16: 14145-16144 Capsella grandiflora
Cagra.0016s0005 2.0kb downstream 2.0kb downstream 3008 true Scaffold16: 16145-19152 Capsella grandiflora
Cagra.0016s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold16: 17153-19152 Capsella grandiflora
Cagra.0016s0005 5.0kb upstream 5.0kb upstream 6008 true Scaffold16: 11145-17152 Capsella grandiflora
Cagra.0016s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold16: 11145-16144 Capsella grandiflora
Cagra.0016s0005 5.0kb downstream 5.0kb downstream 6008 true Scaffold16: 16145-22152 Capsella grandiflora
Cagra.0016s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold16: 17153-22152 Capsella grandiflora
Cagra.0016s0005 10.0kb upstream 10.0kb upstream 11008 true Scaffold16: 6145-17152 Capsella grandiflora
Cagra.0016s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold16: 6145-16144 Capsella grandiflora
Cagra.0016s0005 10.0kb downstream 10.0kb downstream 11008 true Scaffold16: 16145-27152 Capsella grandiflora
Cagra.0016s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold16: 17153-27152 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381199 5261 Brassicaceae View MSA
123803115 5264 Brassicales-Malvales View MSA
124300250 5266 SBM View MSA
124253089 5268 Malvidae View MSA
124072156 5270 Rosid View MSA
123628095 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain