Gene : Cagra.1582s0029 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  29
Name:  ? Cagra.1582s0029 Secondary Identifier:  ? PAC:28904846
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-695 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1582s0029 0.5kb upstream 0.5kb upstream 2241 true Scaffold1582: 115855-118095 Capsella grandiflora
Cagra.1582s0029 0.5kb upstream 0.5kb upstream 500 false Scaffold1582: 117596-118095 Capsella grandiflora
Cagra.1582s0029 0.5kb downstream 0.5kb downstream 2241 true Scaffold1582: 115355-117595 Capsella grandiflora
Cagra.1582s0029 0.5kb downstream 0.5kb downstream 500 false Scaffold1582: 115355-115854 Capsella grandiflora
Cagra.1582s0029 1.0kb upstream 1.0kb upstream 2741 true Scaffold1582: 115855-118595 Capsella grandiflora
Cagra.1582s0029 1.0kb upstream 1.0kb upstream 1000 false Scaffold1582: 117596-118595 Capsella grandiflora
Cagra.1582s0029 1.0kb downstream 1.0kb downstream 2741 true Scaffold1582: 114855-117595 Capsella grandiflora
Cagra.1582s0029 1.0kb downstream 1.0kb downstream 1000 false Scaffold1582: 114855-115854 Capsella grandiflora
Cagra.1582s0029 2.0kb upstream 2.0kb upstream 3741 true Scaffold1582: 115855-119595 Capsella grandiflora
Cagra.1582s0029 2.0kb upstream 2.0kb upstream 2000 false Scaffold1582: 117596-119595 Capsella grandiflora
Cagra.1582s0029 2.0kb downstream 2.0kb downstream 3741 true Scaffold1582: 113855-117595 Capsella grandiflora
Cagra.1582s0029 2.0kb downstream 2.0kb downstream 2000 false Scaffold1582: 113855-115854 Capsella grandiflora
Cagra.1582s0029 5.0kb upstream 5.0kb upstream 6741 true Scaffold1582: 115855-122595 Capsella grandiflora
Cagra.1582s0029 5.0kb upstream 5.0kb upstream 5000 false Scaffold1582: 117596-122595 Capsella grandiflora
Cagra.1582s0029 5.0kb downstream 5.0kb downstream 6741 true Scaffold1582: 110855-117595 Capsella grandiflora
Cagra.1582s0029 5.0kb downstream 5.0kb downstream 5000 false Scaffold1582: 110855-115854 Capsella grandiflora
Cagra.1582s0029 10.0kb upstream 10.0kb upstream 11651 true Scaffold1582: 115855-127505 Capsella grandiflora
Cagra.1582s0029 10.0kb upstream 10.0kb upstream 9910 false Scaffold1582: 117596-127505 Capsella grandiflora
Cagra.1582s0029 10.0kb downstream 10.0kb downstream 11741 true Scaffold1582: 105855-117595 Capsella grandiflora
Cagra.1582s0029 10.0kb downstream 10.0kb downstream 10000 false Scaffold1582: 105855-115854 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332709 5261 Brassicaceae Singleton cluster - no MSA
123841953 5264 Brassicales-Malvales View MSA
124323141 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain