Gene : Cagra.1681s0011 C. grandiflora v1.1
Defline:  (1 of 1) PF07719//PF14559 - Tetratricopeptide repeat (TPR_2) // Tetratricopeptide repeat (TPR_19) Genomic Order:  11
Name:  ? Cagra.1681s0011 Secondary Identifier:  ? PAC:28905258
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7437 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1681s0011 0.5kb upstream 0.5kb upstream 1472 true Scaffold1681: 38737-40208 Capsella grandiflora
Cagra.1681s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold1681: 39709-40208 Capsella grandiflora
Cagra.1681s0011 0.5kb downstream 0.5kb downstream 1472 true Scaffold1681: 38237-39708 Capsella grandiflora
Cagra.1681s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold1681: 38237-38736 Capsella grandiflora
Cagra.1681s0011 1.0kb upstream 1.0kb upstream 1972 true Scaffold1681: 38737-40708 Capsella grandiflora
Cagra.1681s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold1681: 39709-40708 Capsella grandiflora
Cagra.1681s0011 1.0kb downstream 1.0kb downstream 1972 true Scaffold1681: 37737-39708 Capsella grandiflora
Cagra.1681s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold1681: 37737-38736 Capsella grandiflora
Cagra.1681s0011 2.0kb upstream 2.0kb upstream 2972 true Scaffold1681: 38737-41708 Capsella grandiflora
Cagra.1681s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold1681: 39709-41708 Capsella grandiflora
Cagra.1681s0011 2.0kb downstream 2.0kb downstream 2972 true Scaffold1681: 36737-39708 Capsella grandiflora
Cagra.1681s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold1681: 36737-38736 Capsella grandiflora
Cagra.1681s0011 5.0kb upstream 5.0kb upstream 5972 true Scaffold1681: 38737-44708 Capsella grandiflora
Cagra.1681s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold1681: 39709-44708 Capsella grandiflora
Cagra.1681s0011 5.0kb downstream 5.0kb downstream 5972 true Scaffold1681: 33737-39708 Capsella grandiflora
Cagra.1681s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold1681: 33737-38736 Capsella grandiflora
Cagra.1681s0011 10.0kb upstream 10.0kb upstream 10972 true Scaffold1681: 38737-49708 Capsella grandiflora
Cagra.1681s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold1681: 39709-49708 Capsella grandiflora
Cagra.1681s0011 10.0kb downstream 10.0kb downstream 10972 true Scaffold1681: 28737-39708 Capsella grandiflora
Cagra.1681s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold1681: 28737-38736 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369439 5261 Brassicaceae View MSA
123829202 5264 Brassicales-Malvales View MSA
124343294 5266 SBM View MSA
124239314 5268 Malvidae View MSA
124064728 5270 Rosid View MSA
123741274 5271 Pentapetalae View MSA
122788681 5272 Eudicot View MSA
122050724 5273 Angiosperm View MSA
121348352 5274 Embryophyte View MSA
123426406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain