Gene : Cagra.16943s0001 C. grandiflora v1.1
Defline:  (1 of 6) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  1
Name:  ? Cagra.16943s0001 Secondary Identifier:  ? PAC:28915508
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.16943s0001 0.5kb upstream 0.5kb upstream 1769 true Scaffold16943: 57-1825 Capsella grandiflora
Cagra.16943s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold16943: 1326-1825 Capsella grandiflora
Cagra.16943s0001 0.5kb downstream 0.5kb downstream 1325 true Scaffold16943: 1-1325 Capsella grandiflora
Cagra.16943s0001 0.5kb downstream 0.5kb downstream 56 false Scaffold16943: 1-56 Capsella grandiflora
Cagra.16943s0001 1.0kb upstream 1.0kb upstream 2269 true Scaffold16943: 57-2325 Capsella grandiflora
Cagra.16943s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold16943: 1326-2325 Capsella grandiflora
Cagra.16943s0001 1.0kb downstream 1.0kb downstream 1325 true Scaffold16943: 1-1325 Capsella grandiflora
Cagra.16943s0001 1.0kb downstream 1.0kb downstream 56 false Scaffold16943: 1-56 Capsella grandiflora
Cagra.16943s0001 2.0kb upstream 2.0kb upstream 3269 true Scaffold16943: 57-3325 Capsella grandiflora
Cagra.16943s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold16943: 1326-3325 Capsella grandiflora
Cagra.16943s0001 2.0kb downstream 2.0kb downstream 1325 true Scaffold16943: 1-1325 Capsella grandiflora
Cagra.16943s0001 2.0kb downstream 2.0kb downstream 56 false Scaffold16943: 1-56 Capsella grandiflora
Cagra.16943s0001 5.0kb upstream 5.0kb upstream 6269 true Scaffold16943: 57-6325 Capsella grandiflora
Cagra.16943s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold16943: 1326-6325 Capsella grandiflora
Cagra.16943s0001 5.0kb downstream 5.0kb downstream 1325 true Scaffold16943: 1-1325 Capsella grandiflora
Cagra.16943s0001 5.0kb downstream 5.0kb downstream 56 false Scaffold16943: 1-56 Capsella grandiflora
Cagra.16943s0001 10.0kb upstream 10.0kb upstream 11269 true Scaffold16943: 57-11325 Capsella grandiflora
Cagra.16943s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold16943: 1326-11325 Capsella grandiflora
Cagra.16943s0001 10.0kb downstream 10.0kb downstream 1325 true Scaffold16943: 1-1325 Capsella grandiflora
Cagra.16943s0001 10.0kb downstream 10.0kb downstream 56 false Scaffold16943: 1-56 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369304 5261 Brassicaceae View MSA
123836099 5264 Brassicales-Malvales View MSA
124342349 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain