Gene : Cagra.1891s0018 C. grandiflora v1.1
Defline:  (1 of 2) 2.5.1.20 - Rubber cis-polyprenylcistransferase / Rubber transferase Genomic Order:  18
Name:  ? Cagra.1891s0018 Secondary Identifier:  ? PAC:28900486
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5815 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1891s0018 0.5kb upstream 0.5kb upstream 1556 true Scaffold1891: 79618-81173 Capsella grandiflora
Cagra.1891s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold1891: 79618-80117 Capsella grandiflora
Cagra.1891s0018 0.5kb downstream 0.5kb downstream 1556 true Scaffold1891: 80118-81673 Capsella grandiflora
Cagra.1891s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold1891: 81174-81673 Capsella grandiflora
Cagra.1891s0018 1.0kb upstream 1.0kb upstream 2056 true Scaffold1891: 79118-81173 Capsella grandiflora
Cagra.1891s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold1891: 79118-80117 Capsella grandiflora
Cagra.1891s0018 1.0kb downstream 1.0kb downstream 2056 true Scaffold1891: 80118-82173 Capsella grandiflora
Cagra.1891s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold1891: 81174-82173 Capsella grandiflora
Cagra.1891s0018 2.0kb upstream 2.0kb upstream 3056 true Scaffold1891: 78118-81173 Capsella grandiflora
Cagra.1891s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold1891: 78118-80117 Capsella grandiflora
Cagra.1891s0018 2.0kb downstream 2.0kb downstream 3056 true Scaffold1891: 80118-83173 Capsella grandiflora
Cagra.1891s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold1891: 81174-83173 Capsella grandiflora
Cagra.1891s0018 5.0kb upstream 5.0kb upstream 6056 true Scaffold1891: 75118-81173 Capsella grandiflora
Cagra.1891s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold1891: 75118-80117 Capsella grandiflora
Cagra.1891s0018 5.0kb downstream 5.0kb downstream 6056 true Scaffold1891: 80118-86173 Capsella grandiflora
Cagra.1891s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold1891: 81174-86173 Capsella grandiflora
Cagra.1891s0018 10.0kb upstream 10.0kb upstream 11056 true Scaffold1891: 70118-81173 Capsella grandiflora
Cagra.1891s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold1891: 70118-80117 Capsella grandiflora
Cagra.1891s0018 10.0kb downstream 10.0kb downstream 11056 true Scaffold1891: 80118-91173 Capsella grandiflora
Cagra.1891s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold1891: 81174-91173 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362939 5261 Brassicaceae View MSA
123839607 5264 Brassicales-Malvales View MSA
124351128 5266 SBM View MSA
124244449 5268 Malvidae View MSA
124070400 5270 Rosid View MSA
123753715 5271 Pentapetalae View MSA
122795896 5272 Eudicot View MSA
122049873 5273 Angiosperm View MSA
121349663 5274 Embryophyte View MSA
123426106 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain