Gene : Cagra.0084s0011 C. grandiflora v1.1
Defline:  (1 of 54) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  11
Name:  ? Cagra.0084s0011 Secondary Identifier:  ? PAC:28895312
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0084s0011 0.5kb upstream 0.5kb upstream 2358 true Scaffold84: 27353-29710 Capsella grandiflora
Cagra.0084s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold84: 27353-27852 Capsella grandiflora
Cagra.0084s0011 0.5kb downstream 0.5kb downstream 2358 true Scaffold84: 27853-30210 Capsella grandiflora
Cagra.0084s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold84: 29711-30210 Capsella grandiflora
Cagra.0084s0011 1.0kb upstream 1.0kb upstream 2858 true Scaffold84: 26853-29710 Capsella grandiflora
Cagra.0084s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold84: 26853-27852 Capsella grandiflora
Cagra.0084s0011 1.0kb downstream 1.0kb downstream 2858 true Scaffold84: 27853-30710 Capsella grandiflora
Cagra.0084s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold84: 29711-30710 Capsella grandiflora
Cagra.0084s0011 2.0kb upstream 2.0kb upstream 3858 true Scaffold84: 25853-29710 Capsella grandiflora
Cagra.0084s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold84: 25853-27852 Capsella grandiflora
Cagra.0084s0011 2.0kb downstream 2.0kb downstream 3858 true Scaffold84: 27853-31710 Capsella grandiflora
Cagra.0084s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold84: 29711-31710 Capsella grandiflora
Cagra.0084s0011 5.0kb upstream 5.0kb upstream 6858 true Scaffold84: 22853-29710 Capsella grandiflora
Cagra.0084s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold84: 22853-27852 Capsella grandiflora
Cagra.0084s0011 5.0kb downstream 5.0kb downstream 6858 true Scaffold84: 27853-34710 Capsella grandiflora
Cagra.0084s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold84: 29711-34710 Capsella grandiflora
Cagra.0084s0011 10.0kb upstream 10.0kb upstream 11858 true Scaffold84: 17853-29710 Capsella grandiflora
Cagra.0084s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold84: 17853-27852 Capsella grandiflora
Cagra.0084s0011 10.0kb downstream 10.0kb downstream 11858 true Scaffold84: 27853-39710 Capsella grandiflora
Cagra.0084s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold84: 29711-39710 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372058 5261 Brassicaceae View MSA
123831060 5264 Brassicales-Malvales View MSA
124341624 5266 SBM View MSA
124252420 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain