Gene : Cagra.4003s0025 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31080:SF19 - PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN Genomic Order:  25
Name:  ? Cagra.4003s0025 Secondary Identifier:  ? PAC:28894840
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4003s0025 0.5kb upstream 0.5kb upstream 1241 true Scaffold4003: 103938-105178 Capsella grandiflora
Cagra.4003s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold4003: 103938-104437 Capsella grandiflora
Cagra.4003s0025 0.5kb downstream 0.5kb downstream 1241 true Scaffold4003: 104438-105678 Capsella grandiflora
Cagra.4003s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold4003: 105179-105678 Capsella grandiflora
Cagra.4003s0025 1.0kb upstream 1.0kb upstream 1741 true Scaffold4003: 103438-105178 Capsella grandiflora
Cagra.4003s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold4003: 103438-104437 Capsella grandiflora
Cagra.4003s0025 1.0kb downstream 1.0kb downstream 1741 true Scaffold4003: 104438-106178 Capsella grandiflora
Cagra.4003s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold4003: 105179-106178 Capsella grandiflora
Cagra.4003s0025 2.0kb upstream 2.0kb upstream 2741 true Scaffold4003: 102438-105178 Capsella grandiflora
Cagra.4003s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold4003: 102438-104437 Capsella grandiflora
Cagra.4003s0025 2.0kb downstream 2.0kb downstream 2741 true Scaffold4003: 104438-107178 Capsella grandiflora
Cagra.4003s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold4003: 105179-107178 Capsella grandiflora
Cagra.4003s0025 5.0kb upstream 5.0kb upstream 5741 true Scaffold4003: 99438-105178 Capsella grandiflora
Cagra.4003s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold4003: 99438-104437 Capsella grandiflora
Cagra.4003s0025 5.0kb downstream 5.0kb downstream 5741 true Scaffold4003: 104438-110178 Capsella grandiflora
Cagra.4003s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold4003: 105179-110178 Capsella grandiflora
Cagra.4003s0025 10.0kb upstream 10.0kb upstream 10741 true Scaffold4003: 94438-105178 Capsella grandiflora
Cagra.4003s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold4003: 94438-104437 Capsella grandiflora
Cagra.4003s0025 10.0kb downstream 10.0kb downstream 10741 true Scaffold4003: 104438-115178 Capsella grandiflora
Cagra.4003s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold4003: 105179-115178 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376892 5261 Brassicaceae View MSA
123829833 5264 Brassicales-Malvales View MSA
124349206 5266 SBM View MSA
124242648 5268 Malvidae View MSA
124061401 5270 Rosid View MSA
123751304 5271 Pentapetalae View MSA
122797599 5272 Eudicot View MSA
122046899 5273 Angiosperm View MSA
121310670 5274 Embryophyte View MSA
123348096 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain