Gene : Cagra.5222s0010 C. grandiflora v1.1
Defline:  (1 of 5) PTHR12313:SF14 - E3 UBIQUITIN-PROTEIN LIGASE RMA1-RELATED Genomic Order:  10
Name:  ? Cagra.5222s0010 Secondary Identifier:  ? PAC:28896775
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.5222s0010 0.5kb upstream 0.5kb upstream 897 true Scaffold5222: 45520-46416 Capsella grandiflora
Cagra.5222s0010 0.5kb upstream 0.5kb upstream 5 false Scaffold5222: 46412-46416 Capsella grandiflora
Cagra.5222s0010 0.5kb downstream 0.5kb downstream 1392 true Scaffold5222: 45020-46411 Capsella grandiflora
Cagra.5222s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold5222: 45020-45519 Capsella grandiflora
Cagra.5222s0010 1.0kb upstream 1.0kb upstream 897 true Scaffold5222: 45520-46416 Capsella grandiflora
Cagra.5222s0010 1.0kb upstream 1.0kb upstream 5 false Scaffold5222: 46412-46416 Capsella grandiflora
Cagra.5222s0010 1.0kb downstream 1.0kb downstream 1892 true Scaffold5222: 44520-46411 Capsella grandiflora
Cagra.5222s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold5222: 44520-45519 Capsella grandiflora
Cagra.5222s0010 2.0kb upstream 2.0kb upstream 897 true Scaffold5222: 45520-46416 Capsella grandiflora
Cagra.5222s0010 2.0kb upstream 2.0kb upstream 5 false Scaffold5222: 46412-46416 Capsella grandiflora
Cagra.5222s0010 2.0kb downstream 2.0kb downstream 2892 true Scaffold5222: 43520-46411 Capsella grandiflora
Cagra.5222s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold5222: 43520-45519 Capsella grandiflora
Cagra.5222s0010 5.0kb upstream 5.0kb upstream 897 true Scaffold5222: 45520-46416 Capsella grandiflora
Cagra.5222s0010 5.0kb upstream 5.0kb upstream 5 false Scaffold5222: 46412-46416 Capsella grandiflora
Cagra.5222s0010 5.0kb downstream 5.0kb downstream 5892 true Scaffold5222: 40520-46411 Capsella grandiflora
Cagra.5222s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold5222: 40520-45519 Capsella grandiflora
Cagra.5222s0010 10.0kb upstream 10.0kb upstream 897 true Scaffold5222: 45520-46416 Capsella grandiflora
Cagra.5222s0010 10.0kb upstream 10.0kb upstream 5 false Scaffold5222: 46412-46416 Capsella grandiflora
Cagra.5222s0010 10.0kb downstream 10.0kb downstream 10892 true Scaffold5222: 35520-46411 Capsella grandiflora
Cagra.5222s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold5222: 35520-45519 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361245 5261 Brassicaceae View MSA
123829632 5264 Brassicales-Malvales View MSA
124321613 5266 SBM View MSA
124252908 5268 Malvidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain