Gene : Cagra.0990s0003 C. grandiflora v1.1
Defline:  (1 of 5) PTHR23070:SF5 - AAA-TYPE ATPASE FAMILY PROTEIN-RELATED Genomic Order:  3
Name:  ? Cagra.0990s0003 Secondary Identifier:  ? PAC:28909784
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0990s0003 0.5kb upstream 0.5kb upstream 2328 true Scaffold990: 7727-10054 Capsella grandiflora
Cagra.0990s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold990: 7727-8226 Capsella grandiflora
Cagra.0990s0003 0.5kb downstream 0.5kb downstream 2328 true Scaffold990: 8227-10554 Capsella grandiflora
Cagra.0990s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold990: 10055-10554 Capsella grandiflora
Cagra.0990s0003 1.0kb upstream 1.0kb upstream 2828 true Scaffold990: 7227-10054 Capsella grandiflora
Cagra.0990s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold990: 7227-8226 Capsella grandiflora
Cagra.0990s0003 1.0kb downstream 1.0kb downstream 2828 true Scaffold990: 8227-11054 Capsella grandiflora
Cagra.0990s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold990: 10055-11054 Capsella grandiflora
Cagra.0990s0003 2.0kb upstream 2.0kb upstream 3828 true Scaffold990: 6227-10054 Capsella grandiflora
Cagra.0990s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold990: 6227-8226 Capsella grandiflora
Cagra.0990s0003 2.0kb downstream 2.0kb downstream 3828 true Scaffold990: 8227-12054 Capsella grandiflora
Cagra.0990s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold990: 10055-12054 Capsella grandiflora
Cagra.0990s0003 5.0kb upstream 5.0kb upstream 6828 true Scaffold990: 3227-10054 Capsella grandiflora
Cagra.0990s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold990: 3227-8226 Capsella grandiflora
Cagra.0990s0003 5.0kb downstream 5.0kb downstream 6828 true Scaffold990: 8227-15054 Capsella grandiflora
Cagra.0990s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold990: 10055-15054 Capsella grandiflora
Cagra.0990s0003 10.0kb upstream 10.0kb upstream 10054 true Scaffold990: 1-10054 Capsella grandiflora
Cagra.0990s0003 10.0kb upstream 10.0kb upstream 8226 false Scaffold990: 1-8226 Capsella grandiflora
Cagra.0990s0003 10.0kb downstream 10.0kb downstream 11828 true Scaffold990: 8227-20054 Capsella grandiflora
Cagra.0990s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold990: 10055-20054 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122794526 5272 Eudicot View MSA
122372645 5261 Brassicaceae View MSA
123838716 5264 Brassicales-Malvales View MSA
124341066 5266 SBM View MSA
124247852 5268 Malvidae View MSA
124072543 5270 Rosid View MSA
123751074 5271 Pentapetalae View MSA
122051618 5273 Angiosperm View MSA
121350294 5274 Embryophyte View MSA
123428466 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain