Gene : Cagra.6943s0027 C. grandiflora v1.1
Defline:  (1 of 8) KOG1605 - TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) Genomic Order:  27
Name:  ? Cagra.6943s0027 Secondary Identifier:  ? PAC:28894531
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6943s0027 0.5kb upstream 0.5kb upstream 1457 true Scaffold6943: 85564-87020 Capsella grandiflora
Cagra.6943s0027 0.5kb upstream 0.5kb upstream 500 false Scaffold6943: 85564-86063 Capsella grandiflora
Cagra.6943s0027 0.5kb downstream 0.5kb downstream 1457 true Scaffold6943: 86064-87520 Capsella grandiflora
Cagra.6943s0027 0.5kb downstream 0.5kb downstream 500 false Scaffold6943: 87021-87520 Capsella grandiflora
Cagra.6943s0027 1.0kb upstream 1.0kb upstream 1957 true Scaffold6943: 85064-87020 Capsella grandiflora
Cagra.6943s0027 1.0kb upstream 1.0kb upstream 1000 false Scaffold6943: 85064-86063 Capsella grandiflora
Cagra.6943s0027 1.0kb downstream 1.0kb downstream 1957 true Scaffold6943: 86064-88020 Capsella grandiflora
Cagra.6943s0027 1.0kb downstream 1.0kb downstream 1000 false Scaffold6943: 87021-88020 Capsella grandiflora
Cagra.6943s0027 2.0kb upstream 2.0kb upstream 2957 true Scaffold6943: 84064-87020 Capsella grandiflora
Cagra.6943s0027 2.0kb upstream 2.0kb upstream 2000 false Scaffold6943: 84064-86063 Capsella grandiflora
Cagra.6943s0027 2.0kb downstream 2.0kb downstream 2957 true Scaffold6943: 86064-89020 Capsella grandiflora
Cagra.6943s0027 2.0kb downstream 2.0kb downstream 2000 false Scaffold6943: 87021-89020 Capsella grandiflora
Cagra.6943s0027 5.0kb upstream 5.0kb upstream 5957 true Scaffold6943: 81064-87020 Capsella grandiflora
Cagra.6943s0027 5.0kb upstream 5.0kb upstream 5000 false Scaffold6943: 81064-86063 Capsella grandiflora
Cagra.6943s0027 5.0kb downstream 5.0kb downstream 5957 true Scaffold6943: 86064-92020 Capsella grandiflora
Cagra.6943s0027 5.0kb downstream 5.0kb downstream 5000 false Scaffold6943: 87021-92020 Capsella grandiflora
Cagra.6943s0027 10.0kb upstream 10.0kb upstream 10957 true Scaffold6943: 76064-87020 Capsella grandiflora
Cagra.6943s0027 10.0kb upstream 10.0kb upstream 10000 false Scaffold6943: 76064-86063 Capsella grandiflora
Cagra.6943s0027 10.0kb downstream 10.0kb downstream 10957 true Scaffold6943: 86064-97020 Capsella grandiflora
Cagra.6943s0027 10.0kb downstream 10.0kb downstream 10000 false Scaffold6943: 87021-97020 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121502833 5273 Angiosperm View MSA
122343769 5261 Brassicaceae View MSA
123783873 5264 Brassicales-Malvales View MSA
124282083 5266 SBM View MSA
124136736 5268 Malvidae View MSA
123864543 5270 Rosid View MSA
123449845 5271 Pentapetalae View MSA
122485374 5272 Eudicot View MSA
120776130 5274 Embryophyte View MSA
122818414 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain