Gene : Cagra.8452s0002 C. grandiflora v1.1
Defline:  (1 of 168) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2
Name:  ? Cagra.8452s0002 Secondary Identifier:  ? PAC:28901470
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.8452s0002 0.5kb upstream 0.5kb upstream 2739 true Scaffold8452: 4131-6869 Capsella grandiflora
Cagra.8452s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold8452: 4131-4630 Capsella grandiflora
Cagra.8452s0002 0.5kb downstream 0.5kb downstream 2739 true Scaffold8452: 4631-7369 Capsella grandiflora
Cagra.8452s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold8452: 6870-7369 Capsella grandiflora
Cagra.8452s0002 1.0kb upstream 1.0kb upstream 3239 true Scaffold8452: 3631-6869 Capsella grandiflora
Cagra.8452s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold8452: 3631-4630 Capsella grandiflora
Cagra.8452s0002 1.0kb downstream 1.0kb downstream 3239 true Scaffold8452: 4631-7869 Capsella grandiflora
Cagra.8452s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold8452: 6870-7869 Capsella grandiflora
Cagra.8452s0002 2.0kb upstream 2.0kb upstream 4239 true Scaffold8452: 2631-6869 Capsella grandiflora
Cagra.8452s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold8452: 2631-4630 Capsella grandiflora
Cagra.8452s0002 2.0kb downstream 2.0kb downstream 4239 true Scaffold8452: 4631-8869 Capsella grandiflora
Cagra.8452s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold8452: 6870-8869 Capsella grandiflora
Cagra.8452s0002 5.0kb upstream 5.0kb upstream 6869 true Scaffold8452: 1-6869 Capsella grandiflora
Cagra.8452s0002 5.0kb upstream 5.0kb upstream 4630 false Scaffold8452: 1-4630 Capsella grandiflora
Cagra.8452s0002 5.0kb downstream 5.0kb downstream 7239 true Scaffold8452: 4631-11869 Capsella grandiflora
Cagra.8452s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold8452: 6870-11869 Capsella grandiflora
Cagra.8452s0002 10.0kb upstream 10.0kb upstream 6869 true Scaffold8452: 1-6869 Capsella grandiflora
Cagra.8452s0002 10.0kb upstream 10.0kb upstream 4630 false Scaffold8452: 1-4630 Capsella grandiflora
Cagra.8452s0002 10.0kb downstream 10.0kb downstream 12239 true Scaffold8452: 4631-16869 Capsella grandiflora
Cagra.8452s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold8452: 6870-16869 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361683 5261 Brassicaceae View MSA
123834182 5264 Brassicales-Malvales View MSA
124345729 5266 SBM View MSA
124252297 5268 Malvidae View MSA
124072628 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain