Gene : MD10G1196700 M. domestica v1.1
Defline:  (1 of 1) PF00665//PF03732//PF07727 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) Genomic Order:  1683
Name:  ? MD10G1196700 Secondary Identifier:  ? PAC:40090336
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
MD10G1196700 0.5kb upstream 0.5kb upstream 4683 true Chr10: 29461128-29465810 Malus domestica
MD10G1196700 0.5kb upstream 0.5kb upstream 500 false Chr10: 29461128-29461627 Malus domestica
MD10G1196700 0.5kb downstream 0.5kb downstream 4683 true Chr10: 29461628-29466310 Malus domestica
MD10G1196700 0.5kb downstream 0.5kb downstream 500 false Chr10: 29465811-29466310 Malus domestica
MD10G1196700 1.0kb upstream 1.0kb upstream 5183 true Chr10: 29460628-29465810 Malus domestica
MD10G1196700 1.0kb upstream 1.0kb upstream 1000 false Chr10: 29460628-29461627 Malus domestica
MD10G1196700 1.0kb downstream 1.0kb downstream 5183 true Chr10: 29461628-29466810 Malus domestica
MD10G1196700 1.0kb downstream 1.0kb downstream 1000 false Chr10: 29465811-29466810 Malus domestica
MD10G1196700 2.0kb upstream 2.0kb upstream 6183 true Chr10: 29459628-29465810 Malus domestica
MD10G1196700 2.0kb upstream 2.0kb upstream 2000 false Chr10: 29459628-29461627 Malus domestica
MD10G1196700 2.0kb downstream 2.0kb downstream 6183 true Chr10: 29461628-29467810 Malus domestica
MD10G1196700 2.0kb downstream 2.0kb downstream 2000 false Chr10: 29465811-29467810 Malus domestica
MD10G1196700 5.0kb upstream 5.0kb upstream 9183 true Chr10: 29456628-29465810 Malus domestica
MD10G1196700 5.0kb upstream 5.0kb upstream 5000 false Chr10: 29456628-29461627 Malus domestica
MD10G1196700 5.0kb downstream 5.0kb downstream 9183 true Chr10: 29461628-29470810 Malus domestica
MD10G1196700 5.0kb downstream 5.0kb downstream 5000 false Chr10: 29465811-29470810 Malus domestica
MD10G1196700 10.0kb upstream 10.0kb upstream 14183 true Chr10: 29451628-29465810 Malus domestica
MD10G1196700 10.0kb upstream 10.0kb upstream 10000 false Chr10: 29451628-29461627 Malus domestica
MD10G1196700 10.0kb downstream 10.0kb downstream 14183 true Chr10: 29461628-29475810 Malus domestica
MD10G1196700 10.0kb downstream 10.0kb downstream 10000 false Chr10: 29465811-29475810 Malus domestica

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
122207894 5265 Fabidae Singleton cluster - no MSA
124038233 5270 Rosid View MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain