Gene : MD05G1298000 M. domestica v1.1
Defline:  (1 of 2) PF00665//PF03732//PF07727//PF13976 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  2564
Name:  ? MD05G1298000 Secondary Identifier:  ? PAC:40126880
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
MD05G1298000 0.5kb upstream 0.5kb upstream 4859 true Chr05: 43157747-43162605 Malus domestica
MD05G1298000 0.5kb upstream 0.5kb upstream 500 false Chr05: 43162106-43162605 Malus domestica
MD05G1298000 0.5kb downstream 0.5kb downstream 4859 true Chr05: 43157247-43162105 Malus domestica
MD05G1298000 0.5kb downstream 0.5kb downstream 500 false Chr05: 43157247-43157746 Malus domestica
MD05G1298000 1.0kb upstream 1.0kb upstream 5359 true Chr05: 43157747-43163105 Malus domestica
MD05G1298000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 43162106-43163105 Malus domestica
MD05G1298000 1.0kb downstream 1.0kb downstream 5359 true Chr05: 43156747-43162105 Malus domestica
MD05G1298000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 43156747-43157746 Malus domestica
MD05G1298000 2.0kb upstream 2.0kb upstream 6359 true Chr05: 43157747-43164105 Malus domestica
MD05G1298000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 43162106-43164105 Malus domestica
MD05G1298000 2.0kb downstream 2.0kb downstream 6359 true Chr05: 43155747-43162105 Malus domestica
MD05G1298000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 43155747-43157746 Malus domestica
MD05G1298000 5.0kb upstream 5.0kb upstream 9359 true Chr05: 43157747-43167105 Malus domestica
MD05G1298000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 43162106-43167105 Malus domestica
MD05G1298000 5.0kb downstream 5.0kb downstream 9359 true Chr05: 43152747-43162105 Malus domestica
MD05G1298000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 43152747-43157746 Malus domestica
MD05G1298000 10.0kb upstream 10.0kb upstream 14359 true Chr05: 43157747-43172105 Malus domestica
MD05G1298000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 43162106-43172105 Malus domestica
MD05G1298000 10.0kb downstream 10.0kb downstream 14359 true Chr05: 43147747-43162105 Malus domestica
MD05G1298000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 43147747-43157746 Malus domestica

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
122237236 5265 Fabidae View MSA
124038233 5270 Rosid View MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain