Gene : HanXRQChr01g0018741 H. annuus r1.2
Defline:  (1 of 6) PF00665//PF03732//PF07727//PF13976 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  1695
Name:  ? HanXRQChr01g0018741 Secondary Identifier:  ? PAC:40324840
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
HanXRQChr01g0018741 0.5kb upstream 0.5kb upstream 4880 true HanXRQChr01: 110820442-110825321 Helianthus annuus
HanXRQChr01g0018741 0.5kb upstream 0.5kb upstream 500 false HanXRQChr01: 110820442-110820941 Helianthus annuus
HanXRQChr01g0018741 0.5kb downstream 0.5kb downstream 4880 true HanXRQChr01: 110820942-110825821 Helianthus annuus
HanXRQChr01g0018741 0.5kb downstream 0.5kb downstream 500 false HanXRQChr01: 110825322-110825821 Helianthus annuus
HanXRQChr01g0018741 1.0kb upstream 1.0kb upstream 5380 true HanXRQChr01: 110819942-110825321 Helianthus annuus
HanXRQChr01g0018741 1.0kb upstream 1.0kb upstream 1000 false HanXRQChr01: 110819942-110820941 Helianthus annuus
HanXRQChr01g0018741 1.0kb downstream 1.0kb downstream 5380 true HanXRQChr01: 110820942-110826321 Helianthus annuus
HanXRQChr01g0018741 1.0kb downstream 1.0kb downstream 1000 false HanXRQChr01: 110825322-110826321 Helianthus annuus
HanXRQChr01g0018741 2.0kb upstream 2.0kb upstream 6380 true HanXRQChr01: 110818942-110825321 Helianthus annuus
HanXRQChr01g0018741 2.0kb upstream 2.0kb upstream 2000 false HanXRQChr01: 110818942-110820941 Helianthus annuus
HanXRQChr01g0018741 2.0kb downstream 2.0kb downstream 6380 true HanXRQChr01: 110820942-110827321 Helianthus annuus
HanXRQChr01g0018741 2.0kb downstream 2.0kb downstream 2000 false HanXRQChr01: 110825322-110827321 Helianthus annuus
HanXRQChr01g0018741 5.0kb upstream 5.0kb upstream 9380 true HanXRQChr01: 110815942-110825321 Helianthus annuus
HanXRQChr01g0018741 5.0kb upstream 5.0kb upstream 5000 false HanXRQChr01: 110815942-110820941 Helianthus annuus
HanXRQChr01g0018741 5.0kb downstream 5.0kb downstream 9380 true HanXRQChr01: 110820942-110830321 Helianthus annuus
HanXRQChr01g0018741 5.0kb downstream 5.0kb downstream 5000 false HanXRQChr01: 110825322-110830321 Helianthus annuus
HanXRQChr01g0018741 10.0kb upstream 10.0kb upstream 14380 true HanXRQChr01: 110810942-110825321 Helianthus annuus
HanXRQChr01g0018741 10.0kb upstream 10.0kb upstream 10000 false HanXRQChr01: 110810942-110820941 Helianthus annuus
HanXRQChr01g0018741 10.0kb downstream 10.0kb downstream 14380 true HanXRQChr01: 110820942-110835321 Helianthus annuus
HanXRQChr01g0018741 10.0kb downstream 10.0kb downstream 10000 false HanXRQChr01: 110825322-110835321 Helianthus annuus

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
121429481 5263 Asterids Singleton cluster - no MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain