Gene : HanXRQChr02g0034791 H. annuus r1.2
Defline:  (1 of 6) PF00665//PF03732//PF07727//PF13976 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  318
Name:  ? HanXRQChr02g0034791 Secondary Identifier:  ? PAC:40339161
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
HanXRQChr02g0034791 0.5kb upstream 0.5kb upstream 5447   true HanXRQChr02: 18934238-18939684 Helianthus annuus
HanXRQChr02g0034791 0.5kb upstream 0.5kb upstream 500   false HanXRQChr02: 18939185-18939684 Helianthus annuus
HanXRQChr02g0034791 0.5kb downstream 0.5kb downstream 5447   true HanXRQChr02: 18933738-18939184 Helianthus annuus
HanXRQChr02g0034791 0.5kb downstream 0.5kb downstream 500   false HanXRQChr02: 18933738-18934237 Helianthus annuus
HanXRQChr02g0034791 1.0kb upstream 1.0kb upstream 5947   true HanXRQChr02: 18934238-18940184 Helianthus annuus
HanXRQChr02g0034791 1.0kb upstream 1.0kb upstream 1000   false HanXRQChr02: 18939185-18940184 Helianthus annuus
HanXRQChr02g0034791 1.0kb downstream 1.0kb downstream 5947   true HanXRQChr02: 18933238-18939184 Helianthus annuus
HanXRQChr02g0034791 1.0kb downstream 1.0kb downstream 1000   false HanXRQChr02: 18933238-18934237 Helianthus annuus
HanXRQChr02g0034791 2.0kb upstream 2.0kb upstream 6947   true HanXRQChr02: 18934238-18941184 Helianthus annuus
HanXRQChr02g0034791 2.0kb upstream 2.0kb upstream 2000   false HanXRQChr02: 18939185-18941184 Helianthus annuus
HanXRQChr02g0034791 2.0kb downstream 2.0kb downstream 6947   true HanXRQChr02: 18932238-18939184 Helianthus annuus
HanXRQChr02g0034791 2.0kb downstream 2.0kb downstream 2000   false HanXRQChr02: 18932238-18934237 Helianthus annuus
HanXRQChr02g0034791 5.0kb upstream 5.0kb upstream 9947   true HanXRQChr02: 18934238-18944184 Helianthus annuus
HanXRQChr02g0034791 5.0kb upstream 5.0kb upstream 5000   false HanXRQChr02: 18939185-18944184 Helianthus annuus
HanXRQChr02g0034791 5.0kb downstream 5.0kb downstream 9947   true HanXRQChr02: 18929238-18939184 Helianthus annuus
HanXRQChr02g0034791 5.0kb downstream 5.0kb downstream 5000   false HanXRQChr02: 18929238-18934237 Helianthus annuus
HanXRQChr02g0034791 10.0kb upstream 10.0kb upstream 14947   true HanXRQChr02: 18934238-18949184 Helianthus annuus
HanXRQChr02g0034791 10.0kb upstream 10.0kb upstream 10000   false HanXRQChr02: 18939185-18949184 Helianthus annuus
HanXRQChr02g0034791 10.0kb downstream 10.0kb downstream 14947   true HanXRQChr02: 18924238-18939184 Helianthus annuus
HanXRQChr02g0034791 10.0kb downstream 10.0kb downstream 10000   false HanXRQChr02: 18924238-18934237 Helianthus annuus

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
121436392 5263 Asterids Singleton cluster - no MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain