Gene : HanXRQChr17g0540971 H. annuus r1.2
Defline:  (1 of 2) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  737
Name:  ? HanXRQChr17g0540971 Secondary Identifier:  ? PAC:40329062
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Hannuus PWY-5464 Helianthus annuus pathologic  
Hannuus PWY-5690 Helianthus annuus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
HanXRQChr17g0540971 0.5kb upstream 0.5kb upstream 4341   true HanXRQChr17: 25119641-25123981 Helianthus annuus
HanXRQChr17g0540971 0.5kb upstream 0.5kb upstream 500   false HanXRQChr17: 25119641-25120140 Helianthus annuus
HanXRQChr17g0540971 0.5kb downstream 0.5kb downstream 4341   true HanXRQChr17: 25120141-25124481 Helianthus annuus
HanXRQChr17g0540971 0.5kb downstream 0.5kb downstream 500   false HanXRQChr17: 25123982-25124481 Helianthus annuus
HanXRQChr17g0540971 1.0kb upstream 1.0kb upstream 4841   true HanXRQChr17: 25119141-25123981 Helianthus annuus
HanXRQChr17g0540971 1.0kb upstream 1.0kb upstream 1000   false HanXRQChr17: 25119141-25120140 Helianthus annuus
HanXRQChr17g0540971 1.0kb downstream 1.0kb downstream 4841   true HanXRQChr17: 25120141-25124981 Helianthus annuus
HanXRQChr17g0540971 1.0kb downstream 1.0kb downstream 1000   false HanXRQChr17: 25123982-25124981 Helianthus annuus
HanXRQChr17g0540971 2.0kb upstream 2.0kb upstream 5841   true HanXRQChr17: 25118141-25123981 Helianthus annuus
HanXRQChr17g0540971 2.0kb upstream 2.0kb upstream 2000   false HanXRQChr17: 25118141-25120140 Helianthus annuus
HanXRQChr17g0540971 2.0kb downstream 2.0kb downstream 5841   true HanXRQChr17: 25120141-25125981 Helianthus annuus
HanXRQChr17g0540971 2.0kb downstream 2.0kb downstream 2000   false HanXRQChr17: 25123982-25125981 Helianthus annuus
HanXRQChr17g0540971 5.0kb upstream 5.0kb upstream 8841   true HanXRQChr17: 25115141-25123981 Helianthus annuus
HanXRQChr17g0540971 5.0kb upstream 5.0kb upstream 5000   false HanXRQChr17: 25115141-25120140 Helianthus annuus
HanXRQChr17g0540971 5.0kb downstream 5.0kb downstream 8841   true HanXRQChr17: 25120141-25128981 Helianthus annuus
HanXRQChr17g0540971 5.0kb downstream 5.0kb downstream 5000   false HanXRQChr17: 25123982-25128981 Helianthus annuus
HanXRQChr17g0540971 10.0kb upstream 10.0kb upstream 13841   true HanXRQChr17: 25110141-25123981 Helianthus annuus
HanXRQChr17g0540971 10.0kb upstream 10.0kb upstream 10000   false HanXRQChr17: 25110141-25120140 Helianthus annuus
HanXRQChr17g0540971 10.0kb downstream 10.0kb downstream 13841   true HanXRQChr17: 25120141-25133981 Helianthus annuus
HanXRQChr17g0540971 10.0kb downstream 10.0kb downstream 10000   false HanXRQChr17: 25123982-25133981 Helianthus annuus

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469276 5263 Asterids View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain